halophFGD

Basic Information

Locus ID: Ag7G00984

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Ferredoxin-NADP reductase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	79433892	79438807	+	Ag7G00984

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.52	42,076.51 Da	45.55	74.15	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06208	CYPOR_like_FNR	86	376	1.009E-179	-
Pfam	PF00175	Oxidoreductase NAD-binding domain	230	344	7.8E-27	IPR001433
SUPERFAMILY	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain	223	376	3.54E-40	IPR039261
SUPERFAMILY	SSF63380	Riboflavin synthase domain-like	81	222	3.69E-43	IPR017938
Gene3D	G3DSA:2.40.30.10	Translation factors	75	213	1.1E-56	-
Gene3D	G3DSA:3.40.50.80	-	214	375	4.8E-47	IPR039261
PIRSF	PIRSF000361	Frd-NADP+_RD	1	376	4.3E-158	IPR015701
PIRSF	PIRSF501178	FNR-PetH	2	376	6.3E-157	IPR035442
ProSiteProfiles	PS51384	Ferredoxin reductase-type FAD binding domain profile.	91	219	13.985745	IPR017927
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	307	323	3.5E-26	IPR001709
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	126	136	3.5E-26	IPR001709
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	151	158	3.5E-26	IPR001709
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	271	282	3.5E-26	IPR001709
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	330	338	3.5E-26	IPR001709
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	192	201	3.5E-26	IPR001709
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	259	268	3.5E-26	IPR001709
PRINTS	PR00371	Flavoprotein pyridine nucleotide cytochrome reductase signature	229	248	3.5E-26	IPR001709

Gene Ontology

Molecular Function:

GO:0016491 (oxidoreductase activity)

KEGG Pathway

KO Term:

K02641 (ferredoxin--NADP+ reductase [EC:1.18.1.2])

Pathway:

ko00195 (Photosynthesis) map00195 (Photosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G30510.1	root FNR 2. Encodes a root-type ferredoxin:NADP(H) oxidoreductase.
RefSeq	XP_017230404.1	PREDICTED: ferredoxin--NADP reductase, root isozyme, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	O04397	Ferredoxin--NADP reductase, root-type isozyme, chloroplastic OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	A0A166IJJ6	Ferredoxin--NADP reductase, chloroplastic OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003854 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	100.369003	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	69.92115	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	50.727882	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	48.382969	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	50.360371	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	32.908573	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	36.050316	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	37.131851	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	90.305283	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	89.690514	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	89.235802	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	82.940407	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	89.015625	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	84.185661	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	94.741127	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	140.630905	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	147.357468	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	242.218033	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	217.666519	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	262.02594	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	216.088211	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	646.292419	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	644.74054	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	403.406128	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	397.265503	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	416.398285	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	330.148956	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	285.034546	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	443.952667	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	51.530876		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	26.697603		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	25.632627		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	58.599842		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	70.744286		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	54.598431		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	33.826279		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	46.287502		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	40.947056		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	37.914555	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	28.515341	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	74.223351	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	240.890579	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	127.431488	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	80.334358	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	125.616119	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	268.451782	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	168.241241	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	132.178375	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	100.423325	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	97.989243	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg25048, jg38780
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1251, gene_4155
Amaranthaceae	Atriplex hortensis	1	Ah023389
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg29078, Sbi_jg3299
Amaranthaceae	Salicornia europaea	1	Seu_jg6637
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00000113
Amaranthaceae	Suaeda glauca	2	Sgl11472, Sgl16872
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000014838, gene:ENSEOMG00000034026 ... gene:ENSEOMG00000047478
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1AG0008240, CQ.Regalona.r1.2BG0021170
Anacardiaceae	Pistacia vera	1	pistato.v30076710
Apiaceae	Apium graveolens	2	Ag7G00984, Ag9G01148
Arecaceae	Cocos nucifera	1	COCNU_06G020660
Arecaceae	Phoenix dactylifera	1	gene-LOC103711376
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.3462.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G33727, Ftri6G17460
Brassicaceae	Arabidopsis thaliana	2	AT1G30510.2, AT4G05390.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007919m.g.v1.0, Thhalv10028734m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g26350.v2.2, Sp6g03700.v2.2
Brassicaceae	Brassica nigra	2	BniB04g046010.2N, BniB08g046650.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G0564
Casuarinaceae	Casuarina glauca	1	Cgl04G0669
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno17g04310
Dunaliellaceae	Dunaliella salina	2	Dusal.0026s00033.v1.0, Dusal.0152s00027.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g18940
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-636
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.465
Plantaginaceae	Plantago ovata	1	Pov_00013047
Plumbaginaceae	Limonium bicolor	1	Lb4G24591
Poaceae	Echinochloa crus-galli	6	AH01.124, AH03.217, BH03.281, BH03.3864, CH01.488, CH03.348
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0213530, gene-QOZ80_3BG0258650 ... gene-QOZ80_7AG0555510, gene-QOZ80_7BG0586510
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0153470.1, HORVU.MOREX.r3.5HG0516480.1
Poaceae	Lolium multiflorum	3	gene-QYE76_042482, gene-QYE76_061371, gene-QYE76_061458
Poaceae	Oryza coarctata	3	Oco06G026240, Oco13G001400, Oco14G001510
Poaceae	Oryza sativa	2	LOC_Os03g57120.1, LOC_Os07g05400.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G058600, gene-BS78_02G033100
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0107017, Pt_Chr0107045, Pt_Chr0303523
Poaceae	Sporobolus alterniflorus	7	Chr01G003410, Chr04G030030, Chr0G012710, Chr0G020590 ... Chr12G035270, Chr12G035550, Chr19G017960
Poaceae	Thinopyrum elongatum	2	Tel2E01G467100, Tel5E01G663700
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG032870, gene_TRIDC2BG039370 ... gene_TRIDC5AG061190, gene_TRIDC5BG065280
Poaceae	Triticum aestivum	6	TraesCS2A02G252800.1, TraesCS2B02G272500.1 ... TraesCS2D02G253400.1, TraesCS5A02G423000.1, TraesCS5B02G424900.1, TraesCS5D02G431300.1
Poaceae	Zea mays	2	Zm00001eb059850_P001, Zm00001eb299960_P002
Poaceae	Zoysia japonica	2	nbis-gene-16398, nbis-gene-51801
Poaceae	Zoysia macrostachya	2	Zma_g2627, Zma_g5968
Portulacaceae	Portulaca oleracea	2	evm.TU.LG19.503, evm.TU.LG24.583
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g05330
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_16_RagTag.872
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-16824, nbisL1-mrna-25042
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-5244
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-19235
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000022l.50
Rhizophoraceae	Kandelia obovata	1	Maker00016035
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-49, nbisL1-mrna-8627
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-10278
Salicaceae	Populus euphratica	1	populus_peu00858
Solanaceae	Lycium barbarum	2	gene-LOC132621690, gene-LOC132631649
Solanaceae	Solanum chilense	1	SOLCI006735700
Solanaceae	Solanum pennellii	1	gene-LOC107011672
Tamaricaceae	Reaumuria soongarica	1	STRG.17029_chr08_-
Tamaricaceae	Tamarix chinensis	1	TC06G1172
Zosteraceae	Zostera marina	1	Zosma03g23790.v3.1