halophFGD

Basic Information

Locus ID: Ag7G00982

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the NPH3 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	78949877	78954605	-	Ag7G00982

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.94	69,923.63 Da	40.35	95.67	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18312	BTB_POZ_NPY3-like	19	124	4.84372E-44	-
Pfam	PF03000	NPH3 family	216	481	1.5E-93	IPR027356
Pfam	PF00651	BTB/POZ domain	27	114	3.1E-7	IPR000210
SUPERFAMILY	SSF54695	POZ domain	17	114	4.55E-17	IPR011333
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	11	117	2.5E-12	IPR011333
ProSiteProfiles	PS50097	BTB domain profile.	28	98	12.267471	IPR000210
ProSiteProfiles	PS51649	NPH3 domain profile.	216	505	92.194267	IPR027356
MobiDBLite	mobidb-lite	consensus disorder prediction	610	626	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	603	633	-	-
Coils	Coil	Coil	552	579	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G30440.1	Phototropic-responsive NPH3 family protein.
RefSeq	XP_017230175.1	PREDICTED: BTB/POZ domain-containing protein At1g30440-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9S9Q9	BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2
TrEMBL	A0A162B843	NPH3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003869 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	55.205788	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	37.144527	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	25.799299	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	30.513693	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	31.587202	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	17.106878	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	20.346022	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.347175	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	94.065842	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	89.769203	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	101.822487	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	95.911003	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	81.432373	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	72.252998	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	22.017855	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	25.184671	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	32.426674	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	39.258339	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	27.565491	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	32.770065	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	30.329056	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	56.2952	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	57.576031	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	44.41917	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	45.279594	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	51.403488	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	48.398327	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	34.939266	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	48.868015	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	8.05108		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	17.887344		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	13.268229		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	14.251127		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	26.370012		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	15.284418		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.65864		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	10.60801		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	10.148738		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	24.666162	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	16.015816	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.767272	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	8.911811	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	20.527594	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	27.805489	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	28.232758	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	11.15741	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	30.294704	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	45.578854	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	36.549301	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	34.69519	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg14967, jg20811, jg22317, jg3479
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14297, gene_664
Amaranthaceae	Atriplex hortensis	2	Ah016124, Ah032856
Amaranthaceae	Beta vulgaris	2	BVRB_2g040100, BVRB_8g187520
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg23977, Sbi_jg25693, Sbi_jg29712, Sbi_jg29713 ... Sbi_jg43232, Sbi_jg9529
Amaranthaceae	Salicornia europaea	3	Seu_jg12227, Seu_jg18664, Seu_jg19101
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004412, GOSA_00028435
Amaranthaceae	Suaeda glauca	5	Sgl44921, Sgl45043, Sgl49813, Sgl66473, Sgl70807
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000014291, gene:ENSEOMG00000020388 ... gene:ENSEOMG00000034448, gene:ENSEOMG00000048405, gene:ENSEOMG00000051633
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1BG0009390, CQ.Regalona.r1.2AG0006750 ... CQ.Regalona.r1.8AG0011020, CQ.Regalona.r1.8BG0013150
Anacardiaceae	Pistacia vera	3	pistato.v30076130, pistato.v30170970, pistato.v30272580
Apiaceae	Apium graveolens	7	Ag11G04946, Ag2G00706, Ag3G02676, Ag6G01148, Ag7G00263 ... Ag7G00982, Ag8G00740
Arecaceae	Cocos nucifera	6	COCNU_04G007390, COCNU_06G009760, COCNU_06G020580 ... COCNU_12G000540, COCNU_14G006430, COCNU_14G008730
Arecaceae	Phoenix dactylifera	6	gene-LOC103695810, gene-LOC103696802, gene-LOC103703645 ... gene-LOC103710509, gene-LOC103714620, gene-LOC103720574
Asparagaceae	Asparagus officinalis	4	AsparagusV1_06.1912.V1.1, AsparagusV1_06.292.V1.1 ... AsparagusV1_07.3456.V1.1, AsparagusV1_07.3944.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G18318, Ftri17G14064, Ftri17G21018, Ftri18G19124 ... Ftri6G20680, Ftri6G28686
Brassicaceae	Arabidopsis thaliana	3	AT1G30440.1, AT5G03250.1, AT5G13600.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007010m.g.v1.0, Thhalv10013087m.g.v1.0 ... Thhalv10015450m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g26260.v2.2, Sp6g30430.v2.2, Sp6g39480.v2.2
Brassicaceae	Brassica nigra	6	BniB01g024150.2N, BniB02g048950.2N, BniB02g057140.2N ... BniB02g057980.2N, BniB04g045960.2N, BniB08g001010.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0606, Ceq04G0538, Ceq08G1325
Casuarinaceae	Casuarina glauca	3	Cgl02G0620, Cgl04G0636, Cgl08G1350
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g15720, gene.Cymno07g06610, gene.Cymno07g11230
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g01790, gene.Thate04g17350, gene.Thate05g03540 ... gene.Thate07g18730
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5946
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1435, evm.TU.LG02.1038
Plantaginaceae	Plantago ovata	3	Pov_00005103, Pov_00006334, Pov_00013065
Plumbaginaceae	Limonium bicolor	4	Lb2G08454, Lb2G08467, Lb4G25214, Lb5G29321
Poaceae	Echinochloa crus-galli	12	AH01.1259, AH02.3489, AH08.243, AH09.2429, BH01.1464 ... BH02.3468, BH08.224, BH09.2650, CH02.3008, CH06.2664, CH08.266, CH09.2871
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0035750, gene-QOZ80_1BG0085780 ... gene-QOZ80_3AG0224330, gene-QOZ80_3BG0269330, gene-QOZ80_4BG0333240, gene-QOZ80_8AG0616330, gene-QOZ80_8BG0643870
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.2HG0169280.1, HORVU.MOREX.r3.2HG0207070.1 ... HORVU.MOREX.r3.3HG0293570.1, HORVU.MOREX.r3.5HG0428840.1, HORVU.MOREX.r3.5HG0508410.2, HORVU.MOREX.r3.7HG0702520.1, HORVU.MOREX.r3.7HG0732100.1
Poaceae	Lolium multiflorum	5	gene-QYE76_001021, gene-QYE76_033128, gene-QYE76_046633 ... gene-QYE76_056125, gene-QYE76_063529
Poaceae	Oryza coarctata	9	Oco01G021900, Oco02G022470, Oco05G018850, Oco06G019640 ... Oco07G016950, Oco15G001420, Oco16G001530, Oco23G010370, Oco24G010220
Poaceae	Oryza sativa	2	LOC_Os04g54400.1, LOC_Os08g03650.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G144800, gene-BS78_03G297300 ... gene-BS78_06G247800, gene-BS78_07G032900
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0104482, Pt_Chr0402533, Pt_Chr0601628, Pt_Chr0704437
Poaceae	Sporobolus alterniflorus	13	Chr01G009420, Chr02G007940, Chr03G017640, Chr04G024840 ... Chr05G025570, Chr07G023650, Chr12G027600, Chr16G000990, Chr17G000940, Chr20G013240, Chr23G005390, Chr26G016420, Chr29G012100
Poaceae	Thinopyrum elongatum	5	Tel2E01G896900, Tel3E01G512200, Tel5E01G099600 ... Tel5E01G597200, Tel7E01G532200
Poaceae	Triticum dicoccoides	10	gene_TRIDC2AG073850, gene_TRIDC2BG080570 ... gene_TRIDC3AG046190, gene_TRIDC3BG052520, gene_TRIDC5AG006520, gene_TRIDC5AG054940, gene_TRIDC5BG007590, gene_TRIDC5BG058770, gene_TRIDC7AG043160, gene_TRIDC7BG034430
Poaceae	Triticum aestivum	15	TraesCS2A02G526900.1, TraesCS2B02G557300.2 ... TraesCS2D02G529600.1, TraesCS3A02G317300.1, TraesCS3B02G349200.1, TraesCS3D02G314000.1, TraesCS5A02G042600.1, TraesCS5A02G375500.3, TraesCS5B02G046200.2, TraesCS5B02G377600.1, TraesCS5D02G051100.1, TraesCS5D02G385100.1, TraesCS7A02G309700.1, TraesCS7B02G209700.1, TraesCS7D02G306400.1
Poaceae	Zea mays	4	Zm00001eb050610_P001, Zm00001eb069180_P001 ... Zm00001eb151470_P002, Zm00001eb261890_P001
Poaceae	Zoysia japonica	6	nbis-gene-11744, nbis-gene-20462, nbis-gene-22958 ... nbis-gene-39166, nbis-gene-39601, nbis-gene-41498
Poaceae	Zoysia macrostachya	6	Zma_g20524, Zma_g22424, Zma_g23566, Zma_g3195, Zma_g872 ... Zma_g8779
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1800, evm.TU.LG11.1153, evm.TU.LG18.1048 ... evm.TU.LG20.827
Posidoniaceae	Posidonia oceanica	3	gene.Posoc05g06230, gene.Posoc08g07300, gene.Posoc08g08310
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_16_RagTag.865, evm.TU.Scaffold_2_RagTag.876
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-25031, nbisL1-mrna-4329
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18812, nbisL1-mrna-5235
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-19229, nbisL1-mrna-9990
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.879, evm.TU.utg000022l.56
Rhizophoraceae	Kandelia obovata	1	Maker00016202
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12632, nbisL1-mrna-54
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10284, nbisL1-mrna-5858
Salicaceae	Populus euphratica	8	populus_peu00938, populus_peu06262, populus_peu11692 ... populus_peu17837, populus_peu20097, populus_peu25751, populus_peu25752, populus_peu37976
Solanaceae	Lycium barbarum	3	gene-LOC132606889, gene-LOC132631572, gene-LOC132633677
Solanaceae	Solanum chilense	3	SOLCI000078400, SOLCI000597600, SOLCI001415200
Solanaceae	Solanum pennellii	3	gene-LOC107002418, gene-LOC107011567, gene-LOC107029902
Tamaricaceae	Reaumuria soongarica	3	gene_14197, gene_4526, gene_9700
Tamaricaceae	Tamarix chinensis	2	TC06G1133, TC11G2004
Zosteraceae	Zostera marina	3	Zosma01g35710.v3.1, Zosma04g21970.v3.1, Zosma06g04930.v3.1