Basic Information
Locus ID:
Ag7G00931
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Small nuclear ribonucleoprotein-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 72797497 | 72799369 | + | Ag7G00931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 13,323.19 Da | 73.10 | 83.39 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06168 | LSMD1 | 28 | 102 | 1.61347E-25 | IPR034110 |
| Pfam | PF01423 | LSM domain | 31 | 91 | 3.1E-6 | IPR001163 |
| SUPERFAMILY | SSF50182 | Sm-like ribonucleoproteins | 29 | 106 | 1.76E-13 | IPR010920 |
| Gene3D | G3DSA:2.30.30.100 | - | 28 | 106 | 1.8E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18372.1 | Small nuclear ribonucleoprotein family protein. | 0 |
| RefSeq | XP_017238544.1 | PREDICTED: uncharacterized protein LOC108211447 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166IL10 | Sm domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003898 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.718765 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.49617 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.020636 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.106783 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.415495 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.695566 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.388813 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 27.117035 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.520218 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.054132 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.814566 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.284769 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.233189 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.796961 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.974619 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.681801 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.526834 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.16587 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.549451 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.787193 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.815327 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 28.190205 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.84581 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 30.400179 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 25.874424 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.059572 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.047204 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.218408 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.265182 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 17.16408 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 16.515127 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.031849 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.930803 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.876608 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.224195 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.934174 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.633042 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.655223 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.412184 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.849217 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.838195 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.241393 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.608233 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.634115 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.949344 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.297156 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.506899 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 34.122906 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 37.384476 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 27.52824 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22277 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_954 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005300, Ah012634 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g080410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40575, Sbi_jg50603 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2162 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015979 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45143, Sgl49989 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007460, gene:ENSEOMG00000027912 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0004110, CQ.Regalona.r1.4BG0004290 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30094650 |
| Apiaceae | Apium graveolens | 1 | Ag7G00931 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697088 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2806.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G09120 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G18372.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g15690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g072030.2N, BniB05g018080.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15680 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0285s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g09030, gene.Thate04g01360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.861 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001016, Pov_00016280, Pov_00032542, Pov_00034291 |
| Poaceae | Echinochloa crus-galli | 2 | BH06.2487, CH06.2785 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0224810, gene-QOZ80_3BG0270100 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0735450.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_036035, gene-QYE76_059390 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g46390.1 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009730, Chr10G020290, Chr11G002340 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G782600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG064580, gene_TRIDC7BG057750 |
| Poaceae | Triticum aestivum | 2 | TraesCS7A02G462700.1.cds1, TraesCS7D02G450600.1.cds1 |
| Poaceae | Zea mays | 2 | Zm00001eb224700_P001, Zm00001eb273860_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40564, nbis-gene-9750 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30999, Zma_g33252 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1133 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.830 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24993 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12980 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19202 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000022l.38 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16811 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10312 |
| Salicaceae | Populus euphratica | 1 | populus_peu29231 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609188 |
| Solanaceae | Solanum chilense | 2 | SOLCI001460100, SOLCI001984300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028702 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10527, gene_16599 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1049 |
| Zosteraceae | Zostera marina | 1 | Zosma05g27620.v3.1 |