Basic Information
Locus ID:
Ag7G00879
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 64564719 | 64565009 | + | Ag7G00879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 10,940.59 Da | 15.83 | 98.44 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13230.1 | RNA-binding KH domain-containing protein. | 0 |
| RefSeq | XP_017244152.1 | PREDICTED: RNA-binding protein pno1-like [Daucus carota subsp. sativus] | 0 |
| Q9VR89 | RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162AD73 | KH domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.481651 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.52828 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.417423 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.297622 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.196708 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.475341 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.303979 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.214172 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.659909 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.368686 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.855237 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.747115 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.530794 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.81957 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.531739 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.986266 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.28837 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.975009 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.181868 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.667968 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.134264 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.398005 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.081456 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.624875 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.236576 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.906293 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.130183 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.611345 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.342926 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.070832 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.82346 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.974785 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.913608 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.328146 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.443178 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.947831 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.095727 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.946462 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.572657 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.785376 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.227896 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.403066 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.282786 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.929578 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.644363 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.520315 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.614546 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.877743 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.721978 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.996162 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20033, jg31056 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_7473, gene_7474, gene_941 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah015855, Ah024537, Ah025239, Ah031162, Ah031163 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_1g012050, BVRB_4g072570, BVRB_4g088630 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg39092, Sbi_jg39152, Sbi_jg54419, Sbi_jg54475 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg10975, Seu_jg11016, Seu_jg23213 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00015118, GOSA_00022616 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl00475, Sgl00493, Sgl05521, Sgl05539, Sgl15264, Sgl20406 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015195, gene:ENSEOMG00000035290 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0015010, CQ.Regalona.r1.1BG0010920 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30151480, pistato.v30177390 |
| Apiaceae | Apium graveolens | 2 | Ag3G01468, Ag7G00879 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G014370, scaffold036998G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719097, gene-LOC103722556 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1340.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G06753, Ftri2G31871 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13230.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014450m.g.v1.0, Thhalv10021508m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41330.v2.2, Sp3g11460.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g051940.2N, BniB06g025670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1549 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1711, Cgl01G2387 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g05820, gene.Cymno15g03270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0153s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04970 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1489 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.1109, evm.TU.LG02.1919, evm.TU.LG10.397 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00000704, Pov_00019263, Pov_00026366 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.2096, AH09.927, BH09.998, CH02.2967, CH09.1110 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0036240, gene-QOZ80_1BG0086260 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0344470.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056022 |
| Poaceae | Oryza coarctata | 3 | Oco02G022840, Oco05G000890, Oco06G000860 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g57910.1, LOC_Os03g02420.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G046800, gene-BS78_07G173500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601378, Pt_Chr0601695 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr02G007550, Chr03G017890, Chr03G017910, Chr03G017930 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G640500, Tel3E01G278300, Tel7E01G905900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG020430, gene_TRIDC3BG030840 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G152000.1, TraesCS3B02G179200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb151110_P001, Zm00001eb369690_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31299 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11314 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1076, evm.TU.LG14.1457, evm.TU.LG17.1209 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g21870, gene.Posoc09g02390 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.34, evm.TU.Scaffold_8_RagTag.1672 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-8560, nbisL1-mrna-8623 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22370 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000028l.7 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010347 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22559, nbisL1-mrna-23733 |
| Salicaceae | Populus euphratica | 3 | populus_peu00038, populus_peu17071, populus_peu17115 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606670 |
| Solanaceae | Solanum chilense | 3 | SOLCI003587600, SOLCI005382600, SOLCI006346900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023793 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13056, gene_17896 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2542, TC06G0573 |
| Zosteraceae | Zostera marina | 2 | Zosma04g19230.v3.1, Zosma05g04050.v3.1 |