Basic Information
Locus ID:
Ag7G00830
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine Rich repeats (2 copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 57266718 | 57269950 | + | Ag7G00830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 75,374.82 Da | 38.81 | 92.56 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 402 | 576 | 3.4E-19 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 54 | 115 | 7.2E-11 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 132 | 188 | 9.5E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 45 | 240 | 6.8E-39 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 372 | 664 | 3.37E-47 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 357 | 473 | 1.0E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 127 | 2.9E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 128 | 273 | 5.5E-24 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 474 | 578 | 3.6E-15 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 579 | 672 | 7.1E-16 | - |
| SMART | SM00369 | LRR_typ_2 | 152 | 174 | 1.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 78 | 101 | 30.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 132 | 153 | 7.273015 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 154 | 176 | 7.511737 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 398 | 671 | 20.824341 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 294 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45800.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017231441.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Daucus carota subsp. sativus] | 0 |
| Q9FK63 | Calmodulin-binding receptor kinase CaMRLK OS=Arabidopsis thaliana OX=3702 GN=CAMRLK PE=1 SV=1 | 0 | |
| TrEMBL | A0A166IP87 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003996 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.028954 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.448855 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.41854 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.88211 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.203305 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.700937 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.967174 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.808593 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.27644 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.200598 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.139515 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.095089 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.983011 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.403813 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.14818 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.747346 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.713545 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.312945 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.72113 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.888112 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.270961 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.01391 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.206061 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.812647 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.591436 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.26287 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.24399 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.11238 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.097399 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.815986 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.582436 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.379337 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.355887 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.23778 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.2817 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.138335 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.706153 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.357768 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.181783 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.25225 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.410141 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.402593 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.698457 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.326375 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.869042 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.00444 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.567293 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.422604 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.039515 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.881787 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22160 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22332 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017042 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g180990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40400, Sbi_jg50397 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1974 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011546 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43853, Sgl48622 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010651, gene:ENSEOMG00000032960 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0007190, CQ.Regalona.r1.8BG0008080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30072150 |
| Apiaceae | Apium graveolens | 5 | Ag11G04843, Ag6G01073, Ag7G00830, AgUnG00284, AgUnG00285 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G002420, COCNU_03G013770 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701183, gene-LOC103707330 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G14489 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G45800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000810m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g062750.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1322 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1477 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04390 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g23010, gene.Thate02g23020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7567 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.808 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005567 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00380, Lb1G00412 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.1924, AH07.993, BH05.143, BH06.1770, BH07.1109 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0107510, gene-QOZ80_2BG0161130 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0719210.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_021879, gene-QYE76_034317 |
| Poaceae | Oryza coarctata | 4 | Oco03G006520, Oco04G006770, Oco11G010630, Oco12G010700 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g14480.1, LOC_Os06g35200.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G100500, gene-BS78_K185300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0206420, Pt_Chr0400278, Pt_Chr0400433 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G032060, Chr0G013850, Chr10G015990, Chr11G006400 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G634500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG049170, gene_TRIDC7BG044670 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G352300.1, TraesCS7B02G275700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb204660_P001, Zm00001eb383780_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10293, nbis-gene-53124 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12500, Zma_g30654 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1383, evm.TU.LG20.504 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g17850 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.799 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24037 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19054 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19942 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.152 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006317 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20930 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21965 |
| Salicaceae | Populus euphratica | 3 | populus_peu09929, populus_peu18023, populus_peu18040 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622685 |
| Solanaceae | Solanum chilense | 1 | SOLCI005478100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011876 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9750 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0427 |
| Zosteraceae | Zostera marina | 2 | Zosma05g21180.v3.1, Zosma05g25880.v3.1 |