Basic Information
Locus ID:
Ag7G00823
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 56623575 | 56641465 | - | Ag7G00823 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 90,216.25 Da | 53.98 | 88.21 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 560 | 802 | 1.84819E-113 | - |
| Pfam | PF14381 | Ethylene-responsive protein kinase Le-CTR1 | 59 | 250 | 9.3E-45 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 555 | 801 | 5.7E-58 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 529 | 801 | 6.56E-77 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 547 | 632 | 1.7E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 633 | 811 | 4.1E-53 | - |
| SMART | SM00220 | serkin_6 | 554 | 800 | 2.9E-59 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 554 | 810 | 40.300995 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 673 | 685 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 560 | 581 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 458 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko04010 (MAPK signaling pathway)
map04010 (MAPK signaling pathway)
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
map04064 (NF-kappa B signaling pathway)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04214 (Apoptosis - fly)
map04214 (Apoptosis - fly)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04520 (Adherens junction)
map04520 (Adherens junction)
map04620 (Toll-like receptor signaling pathway)
map04621 (NOD-like receptor signaling pathway)
map04622 (RIG-I-like receptor signaling pathway)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
map04657 (IL-17 signaling pathway)
map04660 (T cell receptor signaling pathway)
map04668 (TNF signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58640.1 | Mitogen activated protein kinase kinase kinase-related. | 0 |
| RefSeq | XP_017229388.1 | PREDICTED: tyrosine-protein kinase Fer-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7C033 | Putative serine/threonine-protein kinase EDR1-like isoform X1 OS=Davidia involucrata OX=16924 GN=Din_043861 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.28359 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.144154 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.031552 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.510909 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.747124 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.152855 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.971366 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.71515 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.008864 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.233594 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.636861 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.311574 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.489083 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.067964 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.422868 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.134456 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.579798 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.798687 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.738892 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.966297 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.942431 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.294043 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.193628 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.876902 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.375472 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.675538 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.890337 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.556688 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.414742 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.192576 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.293007 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.156041 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.225676 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.319209 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.399166 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.070751 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.176409 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.140961 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.927776 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.273193 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.4891 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.401513 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.478286 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.502933 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.768759 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.389552 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.7801 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.841465 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.405624 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.616494 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19301, jg22149, jg24373 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21184 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011763 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g209920 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12035, Sbi_jg46956 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21249 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009588 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80439, Sgl82900 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000016382, gene:ENSEOMG00000036752 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0007810, CQ.Regalona.r1.9BG0012620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30089290 |
| Apiaceae | Apium graveolens | 3 | Ag2G01673, Ag3G00521, Ag7G00823 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G013710, COCNU_06G005660 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706893, gene-LOC103723063 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1388.V1.1, AsparagusV1_05.1849.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G10675, Ftri15G29761, Ftri18G07681 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G31010.1, AT2G42640.1, AT3G58640.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10005790m.g.v1.0, Thhalv10016276m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g13490.v2.2, Sp4g24770.v2.2, Sp5g04210.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g003310.2N, BniB01g013160.2N, BniB06g054780.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2862 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2979 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04480 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0160s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g22980, gene.Thate02g35730 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-10252, nbisL1-mrna-10253, nbisL1-mrna-4328 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1706 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005586, Pov_00008580 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G15964, Lb3G19495, Lb3G20027 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2716, AH07.998, BH02.2796, BH07.1111, CH02.3742 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0028300, gene-QOZ80_1BG0078480 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0279390.2, HORVU.MOREX.r3.6HG0584740.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_021893, gene-QYE76_054531 |
| Poaceae | Oryza coarctata | 4 | Oco01G017040, Oco02G017260, Oco03G006540, Oco04G006800 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g48330.1, LOC_Os02g14530.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G228000, gene-BS78_04G100800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0206423, Pt_Chr0602316, Pt_Chr0602327 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G012950, Chr03G013320, Chr05G020740, Chr06G032050 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G452800, Tel6E01G389200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG040340, gene_TRIDC3BG045480 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G271100.1, TraesCS3B02G304900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb157070_P004, Zm00001eb204640_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-26058, nbis-gene-34218, nbis-gene-51683 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10855, Zma_g15409, Zma_g8415 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2150, evm.TU.LG07.1554, evm.TU.LG15.1705 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g17980, gene.Posoc08g02980 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1270, evm.TU.Scaffold_9_RagTag.1158 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11742, nbisL1-mrna-21014 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15207, nbisL1-mrna-8624 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11184, nbisL1-mrna-18664 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.719, evm.TU.utg000006l.743 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009192, Maker00013035 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1339, nbisL1-mrna-9803 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19962, nbisL1-mrna-4906 |
| Salicaceae | Populus euphratica | 3 | populus_peu19069, populus_peu27120, populus_peu37075 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132620451, gene-LOC132624899, gene-LOC132629982 |
| Solanaceae | Solanum chilense | 3 | SOLCI001206100, SOLCI003719700, SOLCI004129200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107007393, gene-LOC107012033, gene-LOC107026049 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14319 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1957, TC03G1577 |
| Zosteraceae | Zostera marina | 1 | Zosma06g13090.v3.1 |