halophFGD

Basic Information

Locus ID: Ag7G00790

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	53914755	53918846	+	Ag7G00790

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.38	109,749.10 Da	34.98	99.11	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	114	172	1.2E-6	IPR001611
Pfam	PF13855	Leucine rich repeat	235	295	3.5E-7	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	21	61	1.7E-8	IPR013210
Pfam	PF00069	Protein kinase domain	685	905	6.7E-41	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	679	963	3.1E-71	IPR011009
SUPERFAMILY	SSF52058	L domain-like	380	605	2.43E-44	-
SUPERFAMILY	SSF52047	RNI-like	69	433	5.02E-64	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	177	278	4.1E-27	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	279	378	1.6E-22	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	19	176	1.4E-40	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	379	612	2.2E-53	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	771	981	2.4E-59	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	667	770	4.2E-22	-
SMART	SM00369	LRR_typ_2	184	208	140.0	IPR003591
SMART	SM00369	LRR_typ_2	497	520	89.0	IPR003591
SMART	SM00220	serkin_6	683	967	9.2E-32	IPR000719
SMART	SM00369	LRR_typ_2	233	256	69.0	IPR003591
SMART	SM00369	LRR_typ_2	282	306	85.0	IPR003591
SMART	SM00369	LRR_typ_2	136	159	57.0	IPR003591
SMART	SM00369	LRR_typ_2	112	135	330.0	IPR003591
SMART	SM00369	LRR_typ_2	257	281	210.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	683	967	36.626152	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	815	827	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	689	712	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G28440.1	HAESA-like 1.
RefSeq	XP_017229249.1	PREDICTED: receptor-like protein kinase HSL1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SGP2	Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1
TrEMBL	A0A166IQN0	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004040 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	16.793531	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	15.212566	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.23134	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	16.209192	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	15.280823	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	9.578025	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.31705	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	5.439647	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	84.117142	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	80.718147	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	83.145607	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	89.573441	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	68.748993	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	54.819576	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	81.779861	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	88.218964	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	109.860123	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	72.666847	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	48.989574	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	42.736568	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	51.484211	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	31.10622	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	30.702085	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	33.400444	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	39.830914	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	57.913906	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	68.930283	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	56.959438	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	65.17688	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.30919		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.925048		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.726548		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	25.260098		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	30.134802		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	24.762009		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	15.61253		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.889634		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.266927		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	31.032967	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	21.151114	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	13.529504	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.546488	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	34.820187	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	69.228088	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	47.877995	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.269792	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	83.497063	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	38.790199	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	35.423336	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	44.426506	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg17325, jg20251, jg22087, jg24923, jg30745
Aizoaceae	Mesembryanthemum crystallinum	2	gene_16947, gene_291
Amaranthaceae	Atriplex hortensis	2	Ah018096, Ah026510
Amaranthaceae	Beta vulgaris	1	BVRB_8g182490
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg13313, Sbi_jg41265, Sbi_jg48839, Sbi_jg52536
Amaranthaceae	Salicornia europaea	2	Seu_jg28072, Seu_jg9308
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00013420, GOSA_00017092
Amaranthaceae	Suaeda glauca	4	Sgl34467, Sgl39878, Sgl46001, Sgl50696
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000001487, gene:ENSEOMG00000009567 ... gene:ENSEOMG00000027991, gene:ENSEOMG00000033555, gene:ENSEOMG00000046598
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.6AG0017470, CQ.Regalona.r1.6BG0018610 ... CQ.Regalona.r1.8AG0005860, CQ.Regalona.r1.8BG0006030
Anacardiaceae	Pistacia vera	2	pistato.v30073150, pistato.v30204450
Apiaceae	Apium graveolens	4	Ag3G00306, Ag7G00790, Ag8G00894, Ag9G01290
Arecaceae	Cocos nucifera	4	COCNU_03G010990, COCNU_05G000930, COCNU_06G006030 ... COCNU_13G004870
Arecaceae	Phoenix dactylifera	4	gene-LOC103696841, gene-LOC103702468, gene-LOC103704254 ... gene-LOC103707322
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.1423.V1.1, AsparagusV1_03.2374.V1.1 ... AsparagusV1_03.95.V1.1, AsparagusV1_05.2856.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G00575, Ftri15G32849, Ftri18G21175, Ftri5G05465
Brassicaceae	Arabidopsis thaliana	3	AT1G28440.1, AT4G28490.1, AT5G65710.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005698m.g.v1.0, Thhalv10006677m.g.v1.0 ... Thhalv10024311m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g24710.v2.2, Sp2g28810.v2.2, Sp7g26470.v2.2
Brassicaceae	Brassica nigra	5	BniB03g016960.2N, BniB03g033280.2N, BniB04g043230.2N ... BniB05g009020.2N, BniB07g043380.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G2154, Ceq02G2701, Ceq06G0418
Casuarinaceae	Casuarina glauca	4	Cgl01G2396, Cgl01G2432, Cgl02G2799, Cgl06G0437
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g13500, gene.Cymno09g06990, gene.Cymno12g04080
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g05660, gene.Thate04g17840, gene.Thate09g08720
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-7152, nbisL1-mrna-942
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2628, evm.TU.LG04.1776, evm.TU.LG12.899
Plantaginaceae	Plantago ovata	3	Pov_00004586, Pov_00029951, Pov_00038312
Plumbaginaceae	Limonium bicolor	5	Lb2G14603, Lb3G20280, Lb3G20843, Lb4G24202, Lb4G25071
Poaceae	Echinochloa crus-galli	8	AH02.40, AH03.1599, BH02.34, BH03.1766, BH08.1326, CH02.34 ... CH03.1916, CH08.1431
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0000250, gene-QOZ80_1BG0048710 ... gene-QOZ80_6AG0532380, gene-QOZ80_6BG0485840, gene-QOZ80_8AG0628250, gene-QOZ80_8BG0656770
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0114510.1, HORVU.MOREX.r3.3HG0250400.1 ... HORVU.MOREX.r3.5HG0473710.1
Poaceae	Lolium multiflorum	4	gene-QYE76_004574, gene-QYE76_031720, gene-QYE76_051741 ... gene-QYE76_051756
Poaceae	Oryza coarctata	6	Oco01G006320, Oco02G006420, Oco15G007280, Oco16G007040 ... Oco17G002770, Oco18G002630
Poaceae	Oryza sativa	4	LOC_Os01g13800.1, LOC_Os08g28870.1, LOC_Os08g38630.1 ... LOC_Os09g15700.1
Poaceae	Paspalum vaginatum	5	gene-BS78_02G152600, gene-BS78_02G152800, gene-BS78_K050900 ... gene-BS78_03G001900, gene-BS78_07G116800
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0604135, Pt_Chr0604192, Pt_Chr0702615
Poaceae	Sporobolus alterniflorus	7	Chr10G011990, Chr11G010280, Chr14G012310, Chr14G017670 ... Chr20G007410, Chr21G016500, Chr29G006910
Poaceae	Thinopyrum elongatum	3	Tel2E01G249900, Tel3E01G287300, Tel5E01G310800
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG014300, gene_TRIDC2BG017260 ... gene_TRIDC3BG025780, gene_TRIDC5AG029900, gene_TRIDC5BG031580
Poaceae	Triticum aestivum	9	TraesCS2A02G118300.1, TraesCS2B02G138400.1 ... TraesCS2D02G116700.1, TraesCS3B02G192500.1, TraesCS3D02G168700.1, TraesCS5A02G183800.1, TraesCS5B02G182100.1, TraesCS5D02G188700.1, TraesCSU02G152100.1
Poaceae	Zea mays	3	Zm00001eb042650_P001, Zm00001eb309940_P001 ... Zm00001eb339500_P001
Poaceae	Zoysia macrostachya	4	Zma_g23994, Zma_g30178, Zma_g32380, Zma_g9477
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.364, evm.TU.LG04.390, evm.TU.LG07.959 ... evm.TU.LG15.872, evm.TU.LG18.1438, evm.TU.LG20.442
Posidoniaceae	Posidonia oceanica	3	gene.Posoc04g07380, gene.Posoc08g11450, gene.Posoc09g04400
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_13_RagTag.345, evm.TU.Scaffold_9_RagTag.1211
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-20959, nbisL1-mrna-30836
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-10461, nbisL1-mrna-8667
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-18711, nbisL1-mrna-21019
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.749, evm.TU.utg000015l.208
Rhizophoraceae	Kandelia obovata	2	Maker00009875, Maker00015479
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1307, nbisL1-mrna-19092
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-23622, nbisL1-mrna-4862
Salicaceae	Populus euphratica	3	populus_peu18124, populus_peu22533, populus_peu23934
Solanaceae	Lycium barbarum	4	gene-LOC132617143, gene-LOC132618954, gene-LOC132621372 ... gene-LOC132621543
Solanaceae	Solanum chilense	4	SOLCI000848200, SOLCI000964000, SOLCI000998800 ... SOLCI004469300
Solanaceae	Solanum pennellii	4	gene-LOC107011470, gene-LOC107011875, gene-LOC107012555 ... gene-LOC107025504
Tamaricaceae	Reaumuria soongarica	3	STRG.18020_chr09_+, STRG.2463_chr01_+, gene_15582
Tamaricaceae	Tamarix chinensis	2	TC07G1378, TC09G0307
Zosteraceae	Zostera marina	5	Zosma01g02240.v3.1, Zosma01g23640.v3.1, Zosma01g30180.v3.1 ... Zosma05g12630.v3.1, Zosma06g07640.v3.1