halophFGD

Basic Information

Locus ID: Ag7G00742

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase RMA1H1-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	48304372	48307938	-	Ag7G00742

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.96	27,227.48 Da	47.01	64.58	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16745	RING-HC_AtRMA_like	29	79	3.56032E-25	-
Pfam	PF00097	Zinc finger, C3HC4 type (RING finger)	31	77	7.5E-9	IPR018957
SUPERFAMILY	SSF57850	RING/U-box	27	90	9.77E-16	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	13	91	1.4E-16	IPR013083
SMART	SM00184	ring_2	31	77	1.4E-9	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	31	78	12.799091	IPR001841
ProSitePatterns	PS00518	Zinc finger RING-type signature.	46	55	-	IPR017907

Gene Ontology

Molecular Function:

GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10666 (E3 ubiquitin-protein ligase RNF5/185 [EC:2.3.2.27])

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G27470.1	RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase.
RefSeq	XP_017230715.1	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q6R567	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1
TrEMBL	A0A166IRW7	RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004077 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	28.77033	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	24.568918	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	26.160553	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	26.263123	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	26.906113	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	22.360443	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	19.702646	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	18.309679	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	42.736992	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	41.464146	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	45.28027	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	37.255886	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	41.317753	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	38.915661	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	114.006462	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	88.292221	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	135.424759	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	86.351219	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	62.450668	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	67.832764	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	78.305283	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	85.842201	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	84.179207	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	75.88739	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	71.574234	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	76.899895	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	85.640945	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	85.481934	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	85.504166	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	84.551292		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	79.35125		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	74.578331		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	109.53006		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	59.608078		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	124.727219		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	125.107361		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	142.68782		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	122.487061		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	51.016521	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	53.260044	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	59.961708	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	16.958887	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	39.798931	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	51.704327	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	66.29937	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	16.692696	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	98.321846	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	63.766613	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	50.55658	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	66.331856	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg20294, jg22047, jg24457, jg24878, jg38293, jg38671
Aizoaceae	Mesembryanthemum crystallinum	3	gene_21048, gene_22244, gene_7442
Amaranthaceae	Atriplex hortensis	4	Ah008134, Ah008135, Ah012155, Ah018023
Amaranthaceae	Beta vulgaris	2	BVRB_8g183250, BVRB_9g206580
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg11794, Sbi_jg18675, Sbi_jg26105, Sbi_jg37114 ... Sbi_jg46609, Sbi_jg51833, Sbi_jg9946
Amaranthaceae	Salicornia europaea	3	Seu_jg18781, Seu_jg21028, Seu_jg4939
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00006893, GOSA_00016791, GOSA_00017032
Amaranthaceae	Suaeda glauca	4	Sgl12979, Sgl28212, Sgl80066, Sgl82503
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000010123, gene:ENSEOMG00000011280 ... gene:ENSEOMG00000017467, gene:ENSEOMG00000033100, gene:ENSEOMG00000039857, gene:ENSEOMG00000042624, gene:ENSEOMG00000045911
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4BG0020520, CQ.Regalona.r1.8AG0005230 ... CQ.Regalona.r1.8BG0005330, CQ.Regalona.r1.9AG0007250, CQ.Regalona.r1.9BG0015150
Anacardiaceae	Pistacia vera	1	pistato.v30088710
Apiaceae	Apium graveolens	5	Ag11G03384, Ag2G01751, Ag7G00742, Ag7G01379, AgUnG00885
Arecaceae	Cocos nucifera	4	COCNU_07G012380, COCNU_07G012390, COCNU_08G010110 ... contig69389235G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103698249, gene-LOC103698721, gene-LOC103712095 ... gene-LOC103721864
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.914.V1.1, AsparagusV1_04.767.V1.1 ... AsparagusV1_07.2081.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G14743, Ftri14G00577, Ftri15G14345, Ftri5G12026 ... Ftri5G26840
Brassicaceae	Arabidopsis thaliana	3	AT4G03510.1, AT4G27470.1, AT4G28270.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10014518m.g.v1.0, Thhalv10026108m.g.v1.0 ... Thhalv10026313m.g.v1.0, Thhalv10028914m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g03530.v2.2, Sp7g25410.v2.2, Sp7g26230.v2.2
Brassicaceae	Brassica nigra	7	BniB02g082960.2N, BniB02g083450.2N, BniB03g011830.2N ... BniB03g012100.2N, BniB05g009260.2N, BniB05g009910.2N, BniB08g046290.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1023, Ceq01G2296, Ceq02G2607
Casuarinaceae	Casuarina glauca	4	Cgl01G1136, Cgl01G1194, Cgl01G2599, Cgl02G2691
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno14g00520
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g00910, gene.Thate08g23080
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-1073, nbisL1-mrna-5757, nbisL1-mrna-9196 ... nbisL1-mrna-9382, nbisL1-mrna-9385
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG04.1858, evm.TU.LG05.1368, evm.TU.LG05.1616 ... evm.TU.LG12.963
Plantaginaceae	Plantago ovata	4	Pov_00004522, Pov_00005617, Pov_00008482, Pov_00031366
Plumbaginaceae	Limonium bicolor	3	Lb1G00151, Lb2G12182, Lb3G19283
Poaceae	Echinochloa crus-galli	4	AH07.2766, BH07.2575, CH07.2639, CH09.1999
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0138790, gene-QOZ80_2BG0194470 ... gene-QOZ80_4AG0309570, gene-QOZ80_4BG0340620
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0183830.1.CDS1 ... HORVU.MOREX.r3.6HG0598420.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_023940, gene-QYE76_023941, gene-QYE76_045161 ... gene-QYE76_045222
Poaceae	Oryza coarctata	4	Oco03G016380, Oco04G017120, Oco07G011330, Oco08G011090
Poaceae	Oryza sativa	2	LOC_Os02g42690.3, LOC_Os04g44820.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G208200, gene-BS78_06G168500
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0301935
Poaceae	Sporobolus alterniflorus	6	Chr09G025030, Chr13G006490, Chr23G008090, Chr25G006640 ... Chr26G011630, Chr30G006550
Poaceae	Thinopyrum elongatum	2	Tel2E01G642700, Tel6E01G448900
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG053920, gene_TRIDC2BG056650 ... gene_TRIDC5AG007650, gene_TRIDC5BG009080, gene_TRIDC6AG036440, gene_TRIDC6BG043240
Poaceae	Triticum aestivum	6	TraesCS2A02G372600.1.cds1, TraesCS2B02G389600.1.cds1 ... TraesCS2D02G368800.1.cds1, TraesCS6A02G236100.1.cds1, TraesCS6B02G264500.1.cds1, TraesCS6D02G218600.1.cds1
Poaceae	Zea mays	3	Zm00001eb075760_P001, Zm00001eb248510_P001 ... Zm00001eb427210_P001
Poaceae	Zoysia japonica	2	nbis-gene-37161, nbis-gene-9363
Poaceae	Zoysia macrostachya	3	Zma_g13980, Zma_g20108, Zma_g21672
Portulacaceae	Portulaca oleracea	9	evm.TU.LG01.54, evm.TU.LG02.707, evm.TU.LG04.696 ... evm.TU.LG06.1079, evm.TU.LG07.1020, evm.TU.LG11.442, evm.TU.LG18.1850, evm.TU.LG20.55, evm.TU.LG20.56
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g04570
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_13_RagTag.229, evm.TU.Scaffold_5_RagTag.1365 ... evm.TU.Scaffold_9_RagTag.1251, evm.TU.Scaffold_9_RagTag.163
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-11217, nbisL1-mrna-11880, nbisL1-mrna-20918 ... nbisL1-mrna-21896, nbisL1-mrna-29477
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-17419, nbisL1-mrna-21100, nbisL1-mrna-2412 ... nbisL1-mrna-8702, nbisL1-mrna-9586
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11097, nbisL1-mrna-20907, nbisL1-mrna-21237 ... nbisL1-mrna-7534
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000003l.36, add.evm.TU.utg000006l.322 ... add.evm.TU.utg000006l.48, add.evm.TU.utg000015l.51, evm.TU.utg000003l.773
Rhizophoraceae	Kandelia obovata	2	Maker00009557, Maker00013106
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17227, nbisL1-mrna-19124, nbisL1-mrna-19446 ... nbisL1-mrna-20385, nbisL1-mrna-20817
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-16893, nbisL1-mrna-21690, nbisL1-mrna-4824 ... nbisL1-mrna-7098, nbisL1-mrna-7135
Salicaceae	Populus euphratica	6	populus_peu00509, populus_peu10071, populus_peu16836 ... populus_peu17563, populus_peu18191, populus_peu18748
Solanaceae	Lycium barbarum	12	gene-LOC132617177, gene-LOC132617807, gene-LOC132622787 ... gene-LOC132622985, gene-LOC132630412, gene-LOC132630419, gene-LOC132630461, gene-LOC132630468, gene-LOC132630486, gene-LOC132636480, gene-LOC132636598, gene-LOC132636599
Solanaceae	Solanum chilense	8	SOLCI000578200, SOLCI002997100, SOLCI005738900 ... SOLCI006342800, SOLCI006368600, SOLCI006368700, SOLCI006693000, SOLCI007033200
Solanaceae	Solanum pennellii	8	gene-LOC107005321, gene-LOC107006800, gene-LOC107009142 ... gene-LOC107024103, gene-LOC107026408, gene-LOC107032175, gene-LOC107032257, gene-LOC107032493
Tamaricaceae	Reaumuria soongarica	3	STRG.27107_chr04_+, gene_13458, gene_16567
Tamaricaceae	Tamarix chinensis	3	TC01G2620, TC07G1284, TC07G2141
Zosteraceae	Zostera marina	3	Zosma01g35250.v3.1, Zosma03g16890.v3.1, Zosma05g24220.v3.1