Basic Information
Locus ID:
Ag7G00740
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Monothiol
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 48259272 | 48263476 | + | Ag7G00740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 53,899.93 Da | 30.78 | 88.34 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03028 | GRX_PICOT_like | 292 | 380 | 1.13545E-52 | IPR033658 |
| CDD | cd02984 | TRX_PICOT | 11 | 104 | 4.72134E-38 | - |
| CDD | cd03028 | GRX_PICOT_like | 401 | 488 | 4.78252E-56 | IPR033658 |
| CDD | cd03028 | GRX_PICOT_like | 161 | 249 | 1.41282E-55 | IPR033658 |
| Pfam | PF00462 | Glutaredoxin | 170 | 234 | 5.1E-17 | IPR002109 |
| Pfam | PF00462 | Glutaredoxin | 408 | 471 | 2.0E-16 | IPR002109 |
| Pfam | PF00462 | Glutaredoxin | 301 | 365 | 7.9E-17 | IPR002109 |
| Pfam | PF00085 | Thioredoxin | 10 | 104 | 2.0E-15 | IPR013766 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 157 | 257 | 5.1E-32 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 289 | 389 | 2.62E-29 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 395 | 492 | 6.49E-31 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 3 | 96 | 9.71E-25 | IPR036249 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 291 | 392 | 1.2E-37 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 160 | 260 | 1.6E-39 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 398 | 493 | 3.1E-39 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 113 | 4.0E-25 | - |
| TIGRFAM | TIGR00365 | TIGR00365: monothiol glutaredoxin, Grx4 family | 158 | 253 | 1.5E-38 | IPR004480 |
| TIGRFAM | TIGR00365 | TIGR00365: monothiol glutaredoxin, Grx4 family | 291 | 385 | 3.2E-35 | IPR004480 |
| TIGRFAM | TIGR00365 | TIGR00365: monothiol glutaredoxin, Grx4 family | 397 | 492 | 1.7E-38 | IPR004480 |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 289 | 391 | 24.213123 | - |
| ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 1 | 108 | 9.324945 | IPR013766 |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 396 | 493 | 25.556749 | - |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 158 | 260 | 25.690475 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04950.1 | thioredoxin family protein. | 0 |
| RefSeq | XP_017230166.1 | PREDICTED: monothiol glutaredoxin-S17 [Daucus carota subsp. sativus] | 0 |
| Q9ZPH2 | Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana OX=3702 GN=GRXS17 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166IRX7 | Thioredoxin domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004078 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 41.531498 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 45.050186 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 33.89146 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 37.05471 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 40.154263 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 38.370445 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 39.121025 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 28.878275 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 57.145321 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 54.696068 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 61.913849 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 60.314129 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 62.727058 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 57.111862 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.483564 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.004988 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.278461 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 24.199329 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 25.14538 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 40.278748 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 40.482357 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 59.887501 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 60.452118 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 50.245338 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 51.183586 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 38.734108 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 25.854221 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 35.567726 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 32.80513 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 44.441113 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 42.456848 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 34.012657 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 37.697941 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 37.712051 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 34.962917 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 37.073421 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 46.600788 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 47.711811 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 29.359175 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 28.506775 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 35.864468 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 45.958118 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 45.749741 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 38.870472 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 41.674713 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 53.042084 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 41.872833 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 43.704876 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 46.071804 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 44.027668 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20297 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_332 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018012 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26163, Sbi_jg9960 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18758 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017023 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45912, Sgl50612 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009571, gene:ENSEOMG00000033137 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005070, CQ.Regalona.r1.8BG0005240 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30088730 |
| Apiaceae | Apium graveolens | 2 | Ag10G00188, Ag7G00740 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G012440 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712092 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.797.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G10092 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G04950.1, AT4G32580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028614m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04010.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g038340.2N, BniB08g047350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2301 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2609 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g01870 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1111s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g09450 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.968 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005707 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24766, Lb5G29235, Lb5G29236 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1686, BH01.1885, CH01.1991 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0112660, gene-QOZ80_2BG0164590 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0047590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011838 |
| Poaceae | Oryza coarctata | 2 | Oco19G007310, Oco20G007220 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g35720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G186300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502820, Pt_Chr0502849 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G030100, Chr09G002070, Chr15G021420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G309300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG025750, gene_TRIDC1BG031290 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G168900.1, TraesCS1B02G188000.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb044380_P001, Zm00001eb091680_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45335 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12700 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1848, evm.TU.LG20.59 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.228 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23778, nbisL1-mrna-29479 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2411 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20906 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.139 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015797 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20944, nbisL1-mrna-5959 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16894, nbisL1-mrna-21914 |
| Salicaceae | Populus euphratica | 2 | populus_peu10075, populus_peu18197 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621496 |
| Solanaceae | Solanum chilense | 1 | SOLCI002556000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011553 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22300_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1283 |
| Zosteraceae | Zostera marina | 1 | Zosma05g24240.v3.1 |