Basic Information
Locus ID:
Ag7G00735
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Sphingolipid delta(4)-desaturase DES1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 48169671 | 48172231 | + | Ag7G00735 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 37,311.66 Da | 42.88 | 85.82 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03508 | Delta4-sphingolipid-FADS-like | 24 | 311 | 1.32559E-170 | IPR011388 |
| Pfam | PF08557 | Sphingolipid Delta4-desaturase (DES) | 6 | 40 | 3.9E-20 | IPR013866 |
| Pfam | PF00487 | Fatty acid desaturase | 63 | 287 | 2.0E-23 | IPR005804 |
| SMART | SM01269 | Lipid_DES_2 | 3 | 41 | 2.7E-20 | IPR013866 |
| PIRSF | PIRSF017228 | Sphnglp_dlt4_des | 2 | 318 | 6.4E-149 | IPR011388 |
| Coils | Coil | Coil | 305 | 318 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04930.1 | fatty acid desaturase family protein. Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues. | 0 |
| RefSeq | XP_017232904.1 | PREDICTED: sphingolipid delta(4)-desaturase DES1-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9ZPH4 | Sphingolipid delta(4)-desaturase DES1-like OS=Arabidopsis thaliana OX=3702 GN=At4g04930 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P6VTK1 | Sphingolipid delta(4)-desaturase DES1-like OS=Coffea arabica OX=13443 GN=LOC113726003 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.781682 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.418876 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.262942 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.641286 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.612442 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.997109 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.836978 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.407646 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.361282 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.18393 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.388055 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.187037 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.918698 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.043978 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.931253 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.874846 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.724787 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.351632 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.882376 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.239323 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.552547 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.920223 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.960591 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.789845 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.949941 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.956043 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.873727 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.978754 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.790203 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.734021 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.654026 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.572291 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.583274 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.625473 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.868042 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.630058 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.433722 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.853533 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.588691 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.968178 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.672244 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.894011 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.291503 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.611842 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.726195 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.9837 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.96682 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.382465 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.392576 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.009608 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22041 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_336 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018002 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26208, Sbi_jg9981 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22367 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017015 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45903, Sgl50602 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011451, gene:ENSEOMG00000034224 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004970, CQ.Regalona.r1.8BG0005150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30073320 |
| Apiaceae | Apium graveolens | 1 | Ag7G00735 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G012560, COCNU_08G010050 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698206, gene-LOC103719205 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3448.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028789m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g04030.v2.2, SpUn0051_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g047380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2306 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2615 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00410 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g09700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7627 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.974 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005711 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G37027 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1677, BH09.1863, CH09.1995 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0309600, gene-QOZ80_4BG0340650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0183780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045163 |
| Poaceae | Oryza coarctata | 2 | Oco03G016360, Oco04G017100 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g42660.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G168200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301968 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G008100, Chr25G006670, Chr26G011590, Chr30G006580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G643100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG053960, gene_TRIDC2BG056700 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G372900.1, TraesCS2B02G389900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb075800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37157 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20104 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1605, evm.TU.LG14.852 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.860 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23782, nbisL1-mrna-29483 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9138 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21594 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.115 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006359 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10641 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21909 |
| Salicaceae | Populus euphratica | 2 | populus_peu18201, populus_peu18202 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631310 |
| Solanaceae | Solanum chilense | 1 | SOLCI007123600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002661 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22291_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2153 |
| Zosteraceae | Zostera marina | 1 | Zosma03g16850.v3.1 |