halophFGD

Basic Information

Locus ID: Ag7G00725

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	46854310	46855338	+	Ag7G00725

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.84	13,127.47 Da	67.18	104.15	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	11	49	2.88E-8	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	8	54	3.8E-6	-
ProSiteProfiles	PS50181	F-box domain profile.	11	57	9.603447	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017226493.1	PREDICTED: F-box/kelch-repeat protein At3g17530-like [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5BAA9	F-box domain-containing protein (Fragment) OS=Apium graveolens OX=4045 GN=AG4045_010847 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.099752	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.142037	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.674148	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.92547	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.16031	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.620219	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.384241	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.796191	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.135496	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.234795	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.116123	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	3.034546	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.546597	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.084663	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.178871	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.723553	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.164694	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.202463	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.487545	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.120917	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.603837	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.738741	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.455619	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.74423	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.134932	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.712588	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.230353	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.00642	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.464923		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.452866		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.744003		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.928853		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.118604		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	2.534115		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.245676		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.736224		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.710454		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.309589	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.732508	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.224526	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.492051	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.235527	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.877272	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.537038	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.091537	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.22997	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.433845	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.164448	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	3.183997	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	13	Ag11G04885, Ag1G00830, Ag1G00923, Ag1G01144, Ag3G01205 ... Ag7G00721, Ag7G00723, Ag7G00725, Ag8G01058, Ag8G01686, Ag8G02035, AgUnG00385, AgUnG01320