Basic Information
Locus ID:
Ag7G00688
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
bromo domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 43371070 | 43379896 | - | Ag7G00688 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.04 | 61,524.84 Da | 53.69 | 68.04 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00167 | SANT | 16 | 63 | 2.00054E-5 | IPR001005 |
| CDD | cd04369 | Bromodomain | 290 | 371 | 8.6804E-18 | - |
| Pfam | PF00439 | Bromodomain | 290 | 360 | 1.7E-11 | IPR001487 |
| SUPERFAMILY | SSF47370 | Bromodomain | 279 | 374 | 5.1E-19 | IPR036427 |
| Gene3D | G3DSA:1.20.920.10 | - | 279 | 386 | 5.0E-17 | IPR036427 |
| SMART | SM00717 | sant | 13 | 69 | 1.3E-4 | IPR001005 |
| SMART | SM00297 | bromo_6 | 272 | 376 | 1.5E-18 | IPR001487 |
| ProSiteProfiles | PS50014 | Bromodomain profile. | 287 | 357 | 11.974401 | IPR001487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 414 | - | - |
| Coils | Coil | Coil | 85 | 112 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61215.1 | bromodomain 4. Bromodomain protein with a DNA binding motif | 0 |
| RefSeq | XP_017250324.1 | PREDICTED: uncharacterized protein LOC108220906 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166ITI8 | Bromo domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004127 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.51408 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.999296 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.112583 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.938907 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.556437 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.787647 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.562797 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.595353 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.808371 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.617143 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.414325 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.206401 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.668372 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.533948 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.000559 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.111938 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.166864 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.472633 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.756283 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.975422 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.39707 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.424527 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.283663 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.04904 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.779189 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.049807 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.811288 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.320181 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.25473 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.218111 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.624701 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.602115 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.603367 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.958555 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.628448 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.718698 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.717848 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.020169 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.254319 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.271443 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.508996 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.581721 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.379592 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.573065 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.962586 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.401572 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.968193 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.306444 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.175708 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.740115 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22036 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22290 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg10177, Sbi_jg26393 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22252 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023969 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl45798, Sgl45838, Sgl50535 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011637, gene:ENSEOMG00000034232 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0004640 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30092460 |
| Apiaceae | Apium graveolens | 1 | Ag7G00688 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G009720, COCNU_14G006410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721472 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2223.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G09847 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G61215.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023448m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03260.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g047240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2448 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2703 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3484 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1007 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005718 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G10378, Lb2G10379, Lb2G15300, Lb4G26171 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0572910, gene-QOZ80_7BG0604170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0134510.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_027228, gene-QYE76_040422 |
| Poaceae | Oryza coarctata | 2 | Oco13G010200, Oco14G010840 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g37800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G317000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G004260, Chr24G010210, Chr27G013030, Chr28G009510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G383900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG026140, gene_TRIDC2BG030600 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G202700.1, TraesCS2B02G229800.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb033860_P001, Zm00001eb107020_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10602, nbis-gene-55378, nbis-gene-674 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5358, Zma_g6673 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1667, evm.TU.LG14.895 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60431.2, evm.TU.60432.2 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23810, nbisL1-mrna-29528, nbisL1-mrna-29909 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2171, nbisL1-mrna-9156 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20877, nbisL1-mrna-21621 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.119, evm.TU.utg000027l.99 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015334, Maker00017471 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10654, nbisL1-mrna-5980 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16921, nbisL1-mrna-23918 |
| Salicaceae | Populus euphratica | 2 | populus_peu10125, populus_peu18246 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622176, gene-LOC132631583 |
| Solanaceae | Solanum chilense | 2 | SOLCI000342200, SOLCI005986200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009260, gene-LOC107032364 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16688 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1247, TC08G0608 |