Basic Information
Locus ID:
Ag7G00680
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Anaphase-promoting complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 42798143 | 42811793 | + | Ag7G00680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 87,545.08 Da | 41.31 | 95.22 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12896 | Anaphase-promoting complex, cyclosome, subunit 4 | 265 | 467 | 1.9E-59 | IPR024790 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 28 | 113 | 1.8E-28 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 22 | 240 | 3.66E-19 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 252 | 2.8E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 51 | 89 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 189 | 240.0 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21530.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017230988.1 | PREDICTED: anaphase-promoting complex subunit 4 [Daucus carota subsp. sativus] | 0 |
| O65418 | Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=APC4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A166ITS1 | Anaphase-promoting complex subunit 4 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.579946 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.250514 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.988158 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.231793 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.853922 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.126104 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.841459 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.311455 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.987183 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.798304 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.817998 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.474583 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.25388 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.003894 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.193742 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.0739 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.022155 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.106964 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.379855 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.293849 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.608296 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.938856 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.636028 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.797685 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.452547 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.792449 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.600759 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.557861 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.500608 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.546513 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.798374 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.904732 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.30998 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.936638 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.952293 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.309099 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.388695 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.329928 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.058464 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.398692 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.388645 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.963922 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.34845 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.534458 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.633342 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.967985 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.469756 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.740855 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.94911 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.078709 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11010 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_394 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah017877, Ah017884 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg10281, Sbi_jg10282, Sbi_jg47990 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22205 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023938 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl31624, Sgl32487, Sgl32495, Sgl37762, Sgl43634, Sgl44201 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011015, gene:ENSEOMG00000032991 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004040, CQ.Regalona.r1.8BG0004200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30092630 |
| Apiaceae | Apium graveolens | 1 | Ag7G00680 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G000310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718156 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2514.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G23287, Ftri11G27623 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G21530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024471m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g19640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g070680.2N, BniB05g015590.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq04G1463, Ceq04G1464, Ceq04G1465 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1628, Cgl04G1629 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06920 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0219s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g11100 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1030 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005780 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24949, Lb4G24958 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3716, BH07.3538, CH07.3610 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0148330, gene-QOZ80_2BG0203700 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0621980.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026151 |
| Poaceae | Oryza coarctata | 2 | Oco03G023690, Oco04G024250 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g54490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G299700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202983 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G018160, Chr13G002390 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G613400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG051800, gene_TRIDC6BG060500 |
| Poaceae | Triticum aestivum | 3 | TraesCS6B02G377000.1, TraesCS6D02G327000.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb125490_P001, Zm00001eb192820_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8492 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14580 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1683, evm.TU.LG14.919 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g14210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.168 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-29553, nbisL1-mrna-29882 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2912 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20862 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.107 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015813 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5990 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16937 |
| Salicaceae | Populus euphratica | 1 | populus_peu10151 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621550 |
| Solanaceae | Solanum chilense | 1 | SOLCI000111100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011184 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22159_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2256 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19410.v3.1 |