Basic Information
Locus ID:
Ag7G00678
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Telomerase Cajal body protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 42456585 | 42458064 | - | Ag7G00678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 18,967.58 Da | 55.45 | 85.18 | -0.43 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61340.1 | F-box family protein. | 0 |
| RefSeq | XP_017240893.1 | PREDICTED: F-box protein At1g61340-like [Daucus carota subsp. sativus] | 0 |
| Q8GX77 | F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166ITU1 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004138 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.208562 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.588219 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.066855 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.226177 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.026268 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.002666 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.054479 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.348662 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 50.509327 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.540367 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.370335 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.531165 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.266657 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.019537 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.788406 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.735953 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.263578 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.617723 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.669657 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 31.990385 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.918446 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.208991 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.677358 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.145785 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.36826 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.111015 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.980338 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.830394 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.805619 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 22.968605 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.216214 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.856645 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 39.78006 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.036617 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 52.100452 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.839441 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.083181 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 22.485062 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.438339 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.240612 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.508813 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 41.840446 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 42.860428 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.242611 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.58769 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 38.923508 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.982219 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.49157 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.972477 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.921612 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg21991, jg24853, jg38656 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_250 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017868 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g181610 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg10369, Sbi_jg10479, Sbi_jg47965 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00023930, GOSA_00028255 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl45750, Sgl45755, Sgl50500 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011163, gene:ENSEOMG00000032453 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0003990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30092660 |
| Apiaceae | Apium graveolens | 3 | Ag6G00973, Ag7G00678, Ag8G00966 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G010210, COCNU_14G006660, COCNU_14G006680 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714768, gene-LOC103719346 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.842.V1.1, AsparagusV1_10.36.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri11G21949, Ftri11G25917, Ftri15G27799, Ftri5G14542 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G61340.2, AT4G05010.1, AT4G21510.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10009722m.g.v1.0, Thhalv10023716m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g03160.v2.2, Sp6g03930.v2.2, SpUn0889_0010.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g059430.2N, BniB04g028420.2N, BniB05g015610.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1471 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1634 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g08380, gene.Cymno14g02140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g14340 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4812, nbisL1-mrna-989 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG12.1035, evm.TU.LG12.1280 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005786, Pov_00038216 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14504 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3366, BH03.3551, CH03.3760 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0572530, gene-QOZ80_7BG0603970 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0135120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040325 |
| Poaceae | Oryza coarctata | 2 | Oco13G009990, Oco14G010630 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g37400.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G315000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304374, Pt_Chr0304405 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G010030, Chr28G009360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G387800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG026540, gene_TRIDC2BG031020 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G205100.1, TraesCS2B02G232500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb106850_P001, Zm00001eb324220_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-698 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6656 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1694, evm.TU.LG14.930, evm.TU.LG16.1352 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g18330, gene.Posoc06g08400 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.917, evm.TU.Scaffold_13_RagTag.159 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23836, nbisL1-mrna-29560, nbisL1-mrna-29875 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2584 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20858 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.103, evm.TU.utg000027l.81 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015816 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10664, nbisL1-mrna-5992 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16940 |
| Salicaceae | Populus euphratica | 2 | populus_peu10156, populus_peu18272 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132617988, gene-LOC132622261, gene-LOC132631640 |
| Solanaceae | Solanum chilense | 3 | SOLCI000585200, SOLCI003963300, SOLCI006503200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107010620, gene-LOC107012557, gene-LOC107032349 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17272_chr09_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1190, TC07G2280 |
| Zosteraceae | Zostera marina | 2 | Zosma01g26260.v3.1, Zosma05g27250.v3.1 |