Basic Information
Locus ID:
Ag7G00653
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Nitric oxide synthase-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 39723432 | 39726716 | + | Ag7G00653 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 33,871.56 Da | 44.39 | 66.18 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16513 | RING1-HC_LONFs | 214 | 256 | 5.63251E-12 | - |
| Pfam | PF04641 | Rtf2 RING-finger | 186 | 268 | 3.1E-7 | - |
| Pfam | PF15906 | Zinc-finger of nitric oxide synthase-interacting protein | 5 | 75 | 1.7E-15 | IPR031790 |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 265 | 1.06E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 35 | 201 | 2.83E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 133 | 1.8E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 270 | 9.7E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 43 | 73 | 1.5 | IPR001841 |
| SMART | SM00184 | ring_2 | 214 | 255 | 0.085 | IPR001841 |
| PIRSF | PIRSF023577 | NOSIP | 2 | 292 | 6.7E-98 | IPR016818 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 214 | 256 | 10.217316 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 233 | 242 | - | IPR017907 |
| Coils | Coil | Coil | 86 | 106 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61620.1 | phosphoinositide binding. | 0 |
| RefSeq | XP_017244643.1 | PREDICTED: nitric oxide synthase-interacting protein-like [Daucus carota subsp. sativus] | 0 |
| Q9SY88 | E3 ubiquitin-protein ligase CSU1 OS=Arabidopsis thaliana OX=3702 GN=CSU1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166IUI1 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004161 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 33.362518 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 31.09226 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 32.230042 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 36.425247 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 34.980042 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 34.30265 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 28.313229 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 28.638777 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 38.427227 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.376854 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 38.185448 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 42.554417 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.930183 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 40.631695 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.923151 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.144732 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.6451 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.094112 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.901548 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.5758 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 21.32958 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.84161 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.347847 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.669857 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.545748 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.224646 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.805405 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.114975 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.119511 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 34.899757 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 30.413738 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 33.546646 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 49.788509 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 48.468048 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 54.476215 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 50.682045 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 41.315296 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 46.186901 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 27.327826 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.876518 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.180496 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 40.508224 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 35.268654 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 43.565411 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 37.191002 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 42.965038 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 31.501316 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.39241 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.68391 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.672571 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20361, jg21974 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22153 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017831 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g144990 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg10292, Sbi_jg31757, Sbi_jg57545 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2364, Seu_jg25227 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023808 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl45702, Sgl45708, Sgl50463 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010049, gene:ENSEOMG00000032307 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0003620, CQ.Regalona.r1.8BG0003750 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30073850, pistato.v30293140 |
| Apiaceae | Apium graveolens | 1 | Ag7G00653 |
| Arecaceae | Cocos nucifera | 4 | COCNU_06G010490, COCNU_06G010510, COCNU_06G010730 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714744, gene-LOC120112417 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G30709 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G61620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023604m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g02960.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g059300.2N, BniB07g047480.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1494 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1663 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g06070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0594s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g16820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1060 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005813 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23697, Lb4G24967 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4138, BH01.4395, CH01.4705 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0243390, gene-QOZ80_3BG0284830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0386940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068925 |
| Poaceae | Oryza coarctata | 2 | Oco05G009930, Oco06G010170 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g17170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G397800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102361, Pt_Chr0303248 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G031310, Chr12G008300 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G358900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG013800, gene_TRIDC4BG036550 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G101400.1, TraesCS4B02G203200.1 ... |
| Poaceae | Zea mays | 7 | Zm00001eb012710_P001, Zm00001eb396290_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2045, nbis-gene-3697 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1502 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1385, evm.TU.LG20.1149 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g11450 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.935 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23860 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11592 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21655 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.70 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017427 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10673 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23881 |
| Salicaceae | Populus euphratica | 2 | populus_peu10227, populus_peu18299 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621451 |
| Solanaceae | Solanum chilense | 1 | SOLCI007165700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011980 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22118_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2577 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22010.v3.1 |