halophFGD

Basic Information

Locus ID: Ag7G00593

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the glycosyl hydrolase 17 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	34297916	34301227	-	Ag7G00593

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.27	54,892.91 Da	34.59	94.65	0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07983	X8 domain	375	446	3.4E-21	IPR012946
Pfam	PF00332	Glycosyl hydrolases family 17	38	357	2.7E-69	IPR000490
SUPERFAMILY	SSF51445	(Trans)glycosidases	38	357	1.9E-77	IPR017853
Gene3D	G3DSA:1.20.58.1040	-	368	488	2.4E-12	-
Gene3D	G3DSA:3.20.20.80	Glycosidases	37	364	3.2E-105	-
SMART	SM00768	X8_cls	374	459	2.3E-49	IPR012946
ProSitePatterns	PS00587	Glycosyl hydrolases family 17 signature.	272	285	-	IPR000490

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds)

KEGG Pathway

KO Term:

K19891 (glucan endo-1,3-beta-glucosidase 1/2/3 [EC:3.2.1.39])

Pathway:

ko00500 (Starch and sucrose metabolism) map00500 (Starch and sucrose metabolism)

Reaction:

R00308 (1,3-beta-D-Glucan + H2O <=> D-Glucose + 1,3-beta-D-Glucan)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G11820.2	O-Glycosyl hydrolases family 17 protein.
RefSeq	XP_017229177.1	PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	O65399	Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3
TrEMBL	A0A1S3ZT70	glucan endo-1,3-beta-glucosidase 1-like OS=Nicotiana tabacum OX=4097 GN=LOC107790109 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.821676	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.826004	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.373706	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.988484	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	8.414598	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	5.097689	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	5.393273	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.122956	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	23.56595	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	24.461117	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	26.164028	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	21.164539	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	16.800356	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	15.850471	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	27.856441	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	29.205339	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	25.947517	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	27.514904	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	23.399637	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	21.831001	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.200535	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	11.32327	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	15.553421	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.059616	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	16.619759	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	22.866079	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	26.190294	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	14.763125	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	21.028742	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	11.672823		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	17.704113		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	16.734497		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	10.344505		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	12.509665		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	10.375464		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.488564		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.529886		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.414782		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	12.478555	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	13.877429	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.432767	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.671598	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.493363	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	7.84362	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	9.353391	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	4.584524	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	10.195251	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	14.271988	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.846004	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	15.544137	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg1626, jg20017, jg20432, jg21868, jg29047, jg29822, jg5146 ... jg7356
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10534, gene_17422, gene_18735, gene_87
Amaranthaceae	Atriplex hortensis	4	Ah004855, Ah015602, Ah017509, Ah033303
Amaranthaceae	Beta vulgaris	4	BVRB_2g039230, BVRB_4g071160, BVRB_6g144440, BVRB_8g185980
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg18064, Sbi_jg19496, Sbi_jg40164, Sbi_jg41965 ... Sbi_jg44051, Sbi_jg48172, Sbi_jg50118, Sbi_jg62691
Amaranthaceae	Salicornia europaea	4	Seu_jg1294, Seu_jg1743, Seu_jg17900, Seu_jg27516
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00011340, GOSA_00014337, GOSA_00015231, GOSA_00025173
Amaranthaceae	Suaeda glauca	8	Sgl23798, Sgl28963, Sgl42758, Sgl46333, Sgl47523, Sgl51048 ... Sgl64256, Sgl68706
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000000862, gene:ENSEOMG00000003410 ... gene:ENSEOMG00000009154, gene:ENSEOMG00000011694, gene:ENSEOMG00000015750, gene:ENSEOMG00000017245, gene:ENSEOMG00000027155, gene:ENSEOMG00000028401, gene:ENSEOMG00000042344, gene:ENSEOMG00000045138, gene:ENSEOMG00000051434
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.2AG0007810, CQ.Regalona.r1.2BG0009180 ... CQ.Regalona.r1.4AG0000270, CQ.Regalona.r1.4BG0000310, CQ.Regalona.r1.6AG0012760, CQ.Regalona.r1.6AG0012770, CQ.Regalona.r1.6BG0012730, CQ.Regalona.r1.8AG0001580, CQ.Regalona.r1.8BG0001510
Anacardiaceae	Pistacia vera	6	pistato.v30050370, pistato.v30086050, pistato.v30190240 ... pistato.v30196800, pistato.v30218030, pistato.v30282550
Apiaceae	Apium graveolens	4	Ag1G01666, Ag7G00593, Ag7G01762, Ag9G01380
Arecaceae	Cocos nucifera	6	COCNU_02G005250, COCNU_06G011950, COCNU_06G014140 ... scaffold001699G000020, scaffold003371G000020, scaffold015002G000020
Arecaceae	Phoenix dactylifera	6	gene-LOC103695690, gene-LOC103697069, gene-LOC103706713 ... gene-LOC103707195, gene-LOC103716286, gene-LOC103719148
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.1553.V1.1, AsparagusV1_07.3874.V1.1
Asteraceae	Flaveria trinervia	8	Ftri11G17022, Ftri12G08386, Ftri15G13201, Ftri16G05516 ... Ftri17G24019, Ftri2G00626, Ftri5G27873, Ftri9G20072
Brassicaceae	Arabidopsis thaliana	4	AT1G11820.2, AT1G66250.1, AT2G01630.1, AT3G13560.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10004013m.g.v1.0, Thhalv10006713m.g.v1.0 ... Thhalv10018427m.g.v1.0, Thhalv10020572m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g10440.v2.2, Sp2g13080.v2.2, Sp3g11770.v2.2 ... Sp5g21310.v2.2
Brassicaceae	Brassica nigra	5	BniB01g051640.2N, BniB02g006570.2N, BniB03g004690.2N ... BniB04g009530.2N, BniB05g062210.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq04G1617, Ceq05G2344, Ceq08G0631, Ceq09G0833
Casuarinaceae	Casuarina glauca	4	Cgl04G1795, Cgl05G2501, Cgl08G0604, Cgl09G0905
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g02400, gene.Cymno09g06340, gene.Cymno11g08330 ... gene.Cymno13g01620
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g37310, gene.Thate05g22130, gene.Thate05g23890
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-2637, nbisL1-mrna-3538, nbisL1-mrna-7704 ... nbisL1-mrna-9890
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.614, evm.TU.LG03.1294, evm.TU.LG09.404 ... evm.TU.LG12.1142
Plantaginaceae	Plantago ovata	4	Pov_00005938, Pov_00017476, Pov_00026349, Pov_00026870
Plumbaginaceae	Limonium bicolor	5	Lb1G04591, Lb2G13159, Lb4G22959, Lb6G31063, Lb7G33226
Poaceae	Echinochloa crus-galli	7	AH01.4495, AH02.3825, AH03.3126, AH03.3478, BH07.4146 ... CH01.5113, Contig192.133
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_3AG0239170, gene-QOZ80_3BG0288820 ... gene-QOZ80_7AG0568740, gene-QOZ80_7AG0574230, gene-QOZ80_7BG0600130, gene-QOZ80_7BG0605510
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0131600.1, HORVU.MOREX.r3.2HG0141980.1 ... HORVU.MOREX.r3.4HG0395910.1, HORVU.MOREX.r3.5HG0466440.1
Poaceae	Lolium multiflorum	6	gene-QYE76_017013, gene-QYE76_040115, gene-QYE76_040612 ... gene-QYE76_041064, gene-QYE76_041144, gene-QYE76_069720
Poaceae	Oryza coarctata	6	Oco05G006760, Oco06G006950, Oco13G008330, Oco13G010840 ... Oco14G008810, Oco14G011580
Poaceae	Oryza sativa	4	LOC_Os03g12140.1, LOC_Os07g32600.1, LOC_Os07g38930.5 ... LOC_Os08g14390.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G434800, gene-BS78_02G289900 ... gene-BS78_02G326000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0101797, Pt_Chr0104181, Pt_Chr0304607, Pt_Chr0405476
Poaceae	Sporobolus alterniflorus	6	Chr01G027610, Chr12G011770, Chr19G003670, Chr24G008300 ... Chr27G013600, Chr28G007620
Poaceae	Thinopyrum elongatum	4	Tel2E01G371100, Tel2E01G418500, Tel4E01G414300 ... Tel5E01G268700
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG023810, gene_TRIDC2AG030070 ... gene_TRIDC2BG029320, gene_TRIDC2BG033800, gene_TRIDC4AG008610, gene_TRIDC4BG042450, gene_TRIDC5AG025880, gene_TRIDC5BG026990
Poaceae	Triticum aestivum	12	TraesCS2A02G186900.1, TraesCS2A02G224900.1 ... TraesCS2B02G220300.1, TraesCS2B02G274900.1, TraesCS2D02G201000.1, TraesCS2D02G230900.1, TraesCS4A02G064900.2, TraesCS4B02G242300.1, TraesCS4D02G241900.1, TraesCS5A02G155600.1, TraesCS5B02G153900.1, TraesCS5D02G160700.1
Poaceae	Zea mays	5	Zm00001eb008930_P001, Zm00001eb107530_P001 ... Zm00001eb322450_P005, Zm00001eb325370_P001, Zm00001eb399910_P002
Poaceae	Zoysia japonica	1	nbis-gene-608
Poaceae	Zoysia macrostachya	4	Zma_g1761, Zma_g5417, Zma_g6503, Zma_g6709
Portulacaceae	Portulaca oleracea	14	evm.TU.LG01.1894, evm.TU.LG05.1267, evm.TU.LG06.1175 ... evm.TU.LG11.522, evm.TU.LG13.870, evm.TU.LG14.1081, evm.TU.LG18.1112, evm.TU.LG18.1113, evm.TU.LG18.885, evm.TU.LG20.758, evm.TU.LG20.760, evm.TU.LG20.982, evm.TU.LG21.538, evm.TU.LG25.96
Posidoniaceae	Posidonia oceanica	4	gene.Posoc03g04640, gene.Posoc04g09170, gene.Posoc08g00370 ... gene.Posoc10g03760
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.1008, evm.TU.Scaffold_3_RagTag.762 ... evm.TU.Scaffold_15_RagTag.223, evm.TU.Scaffold_17_RagTag.777, evm.TU.Scaffold_7_RagTag.1748
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-1196, nbisL1-mrna-19782, nbisL1-mrna-23489 ... nbisL1-mrna-23959, nbisL1-mrna-26452
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-12316, nbisL1-mrna-17333, nbisL1-mrna-17889 ... nbisL1-mrna-20571, nbisL1-mrna-6354, nbisL1-mrna-9106
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-17548, nbisL1-mrna-20040, nbisL1-mrna-21710 ... nbisL1-mrna-6440
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000001l.141, evm.TU.utg000002l.21 ... evm.TU.utg000013l.428, evm.TU.utg000019l.749, evm.TU.utg000027l.28
Rhizophoraceae	Kandelia obovata	5	Maker00004541, Maker00004658, Maker00012127, Maker00012716 ... Maker00017440
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10712, nbisL1-mrna-10823, nbisL1-mrna-11584 ... nbisL1-mrna-5214, nbisL1-mrna-5818
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-12428, nbisL1-mrna-13200, nbisL1-mrna-14262 ... nbisL1-mrna-23282, nbisL1-mrna-2721
Salicaceae	Populus euphratica	7	populus_peu04446, populus_peu09668, populus_peu10360 ... populus_peu18472, populus_peu21192, populus_peu24858, populus_peu35264
Solanaceae	Lycium barbarum	5	gene-LOC132614704, gene-LOC132615184, gene-LOC132625120 ... gene-LOC132626062, gene-LOC132640814
Solanaceae	Solanum chilense	4	SOLCI002550200, SOLCI003965200, SOLCI004136200 ... SOLCI005204300
Solanaceae	Solanum pennellii	4	gene-LOC107008136, gene-LOC107011211, gene-LOC107018050 ... gene-LOC107029045
Tamaricaceae	Reaumuria soongarica	6	STRG.27114_chr04_+, STRG.27115_chr04_+, STRG.28767_chr04_- ... STRG.7338_chr04_-, gene_10205, gene_2441
Tamaricaceae	Tamarix chinensis	5	TC01G2211, TC02G2154, TC04G0106, TC06G2579, TC08G0093
Zosteraceae	Zostera marina	4	Zosma03g23050.v3.1, Zosma03g35630.v3.1, Zosma06g10410.v3.1 ... Zosma06g23210.v3.1