Basic Information
Locus ID:
Ag7G00572
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine/Threonine protein kinases, catalytic domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 32496330 | 32505452 | - | Ag7G00572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 50,298.53 Da | 48.46 | 76.53 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07830 | STKc_MAK_like | 4 | 283 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 4 | 283 | 2.1E-73 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 288 | 7.82E-92 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 84 | 292 | 2.3E-65 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 83 | 6.9E-25 | - |
| SMART | SM00220 | serkin_6 | 4 | 283 | 1.1E-98 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 4 | 283 | 46.915707 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 121 | 133 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 10 | 34 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 441 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19110.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017229322.1 | PREDICTED: cyclin-dependent kinase F-4-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q6Z8C8 | Cyclin-dependent kinase F-4 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166IX69 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004242 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.741753 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.276249 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.273478 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.700632 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.323503 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.963442 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.447857 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.169689 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 46.904133 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 48.381943 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 55.456173 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 58.146904 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 53.681381 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 52.985577 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 56.631001 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 52.326904 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 53.068443 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 50.934238 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 49.783527 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 35.433292 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 58.923847 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 33.787548 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 36.982407 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 44.156921 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 37.023045 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 55.757004 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 43.653378 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 52.695831 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 59.178551 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 49.045071 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 75.500763 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 58.984665 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 28.214443 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 36.915615 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 31.254847 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.370947 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 23.445387 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 19.19412 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.014009 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 51.213356 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 51.682617 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 53.158371 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 42.991047 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.987349 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 31.08427 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 37.050064 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 39.029823 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 38.743416 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 90.998901 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 67.714615 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23622, jg36974, jg7724 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7311 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008665 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_4g087780, BVRB_8g182980, BVRB_8g185210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18906, Sbi_jg37363 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5200 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019935 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22668, Sgl27792 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008202, gene:ENSEOMG00000027754 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0022220, CQ.Regalona.r1.4BG0023450 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30051740 |
| Apiaceae | Apium graveolens | 3 | Ag5G01295, Ag6G00863, Ag7G00572 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G005760, COCNU_10G009880 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103698810, gene-LOC103714508, gene-LOC103716659 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.100.V1.1, AsparagusV1_10.61.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G24877, Ftri16G23896, Ftri7G11481 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G19110.2, AT5G45430.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000881m.g.v1.0, Thhalv10027028m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g10410.v2.2, Sp7g17810.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g062440.2N, BniB02g071560.2N, BniB04g011610.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0091 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0065, Cgl01G0067 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno15g00690, gene.Cymno18g05100, gene.Cymno18g05110 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0013s00033.v1.0, Dusal.0905s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g06290, gene.Thate05g07210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11424 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.944 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003796, Pov_00028545 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03262, Lb2G11379 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3123, BH06.107, BH07.2948, BH07.2949, CH06.101 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0142210, gene-QOZ80_2BG0197690 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0606710.1, HORVU.MOREX.r3.7HG0641060.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024609, gene-QYE76_027590 |
| Poaceae | Oryza coarctata | 4 | Oco03G019060, Oco04G019830, Oco11G000900, Oco12G000790 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g47220.1, LOC_Os06g02550.1, LOC_Os06g02555.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G245100, gene-BS78_10G012500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203888, Pt_Chr0401886 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G004370, Chr09G022560, Chr0G014770, Chr10G000310 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G495600, Tel7E01G102300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG065120, gene_TRIDC6AG041340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G434800.1, TraesCS6A02G269400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb188190_P001, Zm00001eb251700_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-22140, nbis-gene-51200, nbis-gene-9021 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14210, Zma_g16961, Zma_g31244 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1617, evm.TU.LG09.307, evm.TU.LG19.424 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g01820 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.715, evm.TU.Scaffold_16_RagTag.673 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24836 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11721 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17052 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.169 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016155 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15827, nbisL1-mrna-177 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10431, nbisL1-mrna-9040 |
| Salicaceae | Populus euphratica | 5 | populus_peu04175, populus_peu26480, populus_peu34127 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132609653, gene-LOC132635410, gene-LOC132638577 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI001793000, SOLCI003665800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107028187, gene-LOC107028518, gene-LOC107028667 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.20664_chr08_-, STRG.24900_chr08_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2820, TC06G0306 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02420.v3.1 |