Basic Information
Locus ID:
Ag7G00520
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Phosphatidylinositol-glycan biosynthesis class X
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 27568602 | 27579588 | + | Ag7G00520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 10,772.27 Da | 52.46 | 86.50 | -0.08 |
Protein Domain:
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46850.1 | 0 | |
| RefSeq | XP_017224186.1 | PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YJ35 | Phosphatidylinositol-glycan biosynthesis class X protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031128 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.015211 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.906664 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.623045 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.763949 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.080738 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.641771 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.580777 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.997842 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.719264 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.491995 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.928905 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.293577 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.896098 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.538733 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.26926 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.076155 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.160827 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.705464 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.748986 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.299541 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.52382 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.902771 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.737549 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.765203 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.922276 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.221865 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.005719 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.372357 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.149632 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.12342 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.799796 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.976563 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.000098 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.413593 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.185965 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.664626 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.317971 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.559031 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.651219 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.904511 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.878661 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.060171 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.191273 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.244587 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.610966 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.229081 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.253607 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.554635 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.345795 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.47025 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4974 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15044 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015347 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25358, Sbi_jg9210 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19378 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011148 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41797, Sgl46597 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011370, gene:ENSEOMG00000033746 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014340, CQ.Regalona.r1.8BG0015720 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30029730 |
| Apiaceae | Apium graveolens | 2 | Ag6G00813, Ag7G00520 |
| Arecaceae | Cocos nucifera | 1 | scaffold080831G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707324, gene-LOC103721745, gene-LOC103723332 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.328.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22485 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G46850.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000976m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g11650.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g063500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0284 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0297 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g01720 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0698s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g08050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.816 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003041 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32187 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3940, BH05.4031, CH05.4229 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0396560, gene-QOZ80_5BG0444830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0436640.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000644, gene-QYE76_054345 |
| Poaceae | Oryza coarctata | 2 | Oco23G009720, Oco24G009430 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g40500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G130900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0603304, Pt_Chr0704233, Pt_Chr0704598 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G018400, Chr06G019140, Chr19G008210, Chr27G008430 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G502700, Tel5E01G130100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1BG052420, gene_TRIDC5AG009520 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1B02G322700.1, TraesCS1D02G311200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030880_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44613 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25276 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3015, evm.TU.LG16.594 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g03910 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.505 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7358 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17738 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22136 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.203 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014367 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3337 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6397 |
| Salicaceae | Populus euphratica | 2 | populus_peu03217, populus_peu34066 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635326 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028800 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13995 |
| Zosteraceae | Zostera marina | 1 | Zosma05g18350.v3.1 |