Basic Information
Locus ID:
Ag7G00514
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 27134692 | 27136011 | - | Ag7G00514 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 38,319.34 Da | 52.43 | 64.79 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 104 | 147 | 7.12444E-19 | - |
| Pfam | PF13639 | Ring finger domain | 104 | 147 | 9.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 153 | 1.21E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 153 | 3.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 105 | 146 | 1.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 105 | 147 | 12.577796 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 210 | - | - |
| Coils | Coil | Coil | 226 | 246 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46650.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017254480.1 | PREDICTED: RING-H2 finger protein ATL29-like [Daucus carota subsp. sativus] | 0 |
| Q9FIR0 | RING-H2 finger protein ATL30 OS=Arabidopsis thaliana OX=3702 GN=ATL30 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166F729 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008253 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.308222 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.406739 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.767472 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.026838 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.890818 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.551597 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.112656 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.263025 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.350616 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.380651 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.988147 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.834361 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.199513 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.235872 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.564628 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.33085 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.076238 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.651818 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.136464 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.095645 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.35799 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.211185 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.756338 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.625359 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.660105 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.798737 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.803626 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.348718 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.921515 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.504261 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.576327 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.267789 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.673678 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.809803 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.586091 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.8889 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.381986 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.258512 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.576401 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.9793 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.760531 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.163498 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.401355 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.876191 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.646621 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.28321 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.738568 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.280995 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.493721 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.608288 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4962 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2120 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004294 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24519, Sbi_jg8370 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11677 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001703 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51300, Sgl56706 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000022051, gene:ENSEOMG00000025055 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0002260, CQ.Regalona.r1.5BG0002380 ... |
| Apiaceae | Apium graveolens | 2 | Ag7G00514, Ag8G01115 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC113462558 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G15963, Ftri3G04090 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G35420.1, AT4G17920.1, AT5G46650.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001206m.g.v1.0, Thhalv10017563m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g11480.v2.2, Sp4g17640.v2.2, Sp7g16180.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g009100.2N, BniB02g063310.2N, BniB02g072350.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0372 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0370 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g07200 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.793 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003004 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g00440 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.493 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17815, nbisL1-mrna-22761 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12962, nbisL1-mrna-8341 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-22128, nbisL1-mrna-8210 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000007l.39, add.evm.TU.utg000022l.118 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18057, nbisL1-mrna-23324 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10573, nbisL1-mrna-6407 |
| Salicaceae | Populus euphratica | 4 | populus_peu03192, populus_peu03195, populus_peu34048 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609722, gene-LOC132638217 |
| Solanaceae | Solanum chilense | 2 | SOLCI002820000, SOLCI005766600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028299 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2920 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0777, TC09G0486 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02810.v3.1 |