Basic Information
Locus ID:
Ag7G00468
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
C-type lectin receptor-like tyrosine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 22969833 | 22973672 | + | Ag7G00468 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 60,690.96 Da | 45.35 | 87.13 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00037 | CLECT | 55 | 177 | 7.40095E-15 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 266 | 536 | 6.0E-39 | IPR001245 |
| Pfam | PF00059 | Lectin C-type domain | 63 | 178 | 2.4E-10 | IPR001304 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 234 | 536 | 1.03E-63 | IPR011009 |
| SUPERFAMILY | SSF56436 | C-type lectin-like | 30 | 180 | 1.03E-20 | IPR016187 |
| Gene3D | G3DSA:3.10.100.10 | - | 24 | 181 | 1.0E-19 | IPR016186 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 337 | 539 | 1.1E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 236 | 335 | 1.2E-25 | - |
| SMART | SM00034 | CLECT_2 | 43 | 178 | 4.3E-14 | IPR001304 |
| SMART | SM00219 | tyrkin_6 | 259 | 536 | 1.9E-13 | IPR020635 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 260 | 537 | 31.679253 | IPR000719 |
| ProSiteProfiles | PS50041 | C-type lectin domain profile. | 52 | 178 | 13.2356 | IPR001304 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 17 | 5.0 | - |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 382 | 394 | - | IPR008266 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52310.1 | protein kinase family protein / C-type lectin domain-containing protein. | 0 |
| RefSeq | XP_017217713.1 | PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Daucus carota subsp. sativus] | 0 |
| Q9C823 | C-type lectin receptor-like tyrosine-protein kinase At1g52310 OS=Arabidopsis thaliana OX=3702 GN=At1g52310 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BD10 | C-type lectin receptor-like tyrosine-protein kinase OS=Davidia involucrata OX=16924 GN=Din_036261 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.577759 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.441457 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.460308 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.829689 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.236127 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.962879 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.387987 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.111045 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 29.525627 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.310591 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.311853 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.347582 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.465008 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.226957 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.253273 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.465565 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.425283 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.183992 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.175155 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.004063 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.659798 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.248878 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.199053 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.526594 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 23.560526 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.372471 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.88315 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.342152 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.106682 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.631175 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.412262 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.153081 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.901781 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.554934 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.777824 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.441596 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.605589 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.571844 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.091061 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.92995 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.376477 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.140543 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.549123 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.167247 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.127935 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.80143 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.867805 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.375372 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.436337 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.793953 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21134 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5036 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036675 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012420 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg40278 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1859 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011435 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl00271 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008232, gene:ENSEOMG00000035921 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016920, CQ.Regalona.r1.7BG0019690 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30079970, pistato.v30258490 |
| Apiaceae | Apium graveolens | 2 | Ag7G00468, Ag9G02523 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G006460 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722321 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1232.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G32811 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G52310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011366m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g38840.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g003570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1661 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1717 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g10850 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.340 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012906 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33457 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1088, BH02.1024, CH02.1132 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0006290, gene-QOZ80_1BG0055010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231480.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_021313, gene-QYE76_054346 |
| Poaceae | Oryza coarctata | 2 | Oco01G000220, Oco02G000220 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g01410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G095800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202136, Pt_Chr0202179, Pt_Chr0303748 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G025530, Chr03G002600, Chr05G003260, Chr08G002470 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G143100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG009380, gene_TRIDC3BG013250 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G078700.1, TraesCS3B02G093800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb126930_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7208 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9798 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.803, evm.TU.LG20.1088 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g07080 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1026 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13465 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14007 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9258 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.285 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003969 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3659 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7681 |
| Salicaceae | Populus euphratica | 1 | populus_peu02981 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623155 |
| Solanaceae | Solanum chilense | 1 | SOLCI004803600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011711 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9233_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1001 |
| Zosteraceae | Zostera marina | 1 | Zosma02g14980.v3.1 |