Basic Information
Locus ID:
Ag7G00461
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pre-mRNA splicing factor PRP21 like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 22275451 | 22279867 | - | Ag7G00461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 88,357.00 Da | 60.19 | 70.93 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01800 | Ubl_SF3a120 | 708 | 788 | 1.92929E-27 | IPR035563 |
| Pfam | PF00240 | Ubiquitin family | 723 | 790 | 5.3E-8 | IPR000626 |
| Pfam | PF12230 | Pre-mRNA splicing factor PRP21 like protein | 255 | 471 | 5.7E-55 | IPR022030 |
| Pfam | PF01805 | Surp module | 66 | 117 | 2.9E-21 | IPR000061 |
| Pfam | PF01805 | Surp module | 186 | 237 | 2.8E-16 | IPR000061 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 689 | 793 | 4.37E-20 | IPR029071 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 46 | 120 | 3.92E-24 | IPR035967 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 164 | 238 | 2.22E-19 | IPR035967 |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 52 | 124 | 3.9E-27 | IPR035967 |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 181 | 239 | 3.0E-24 | IPR035967 |
| Gene3D | G3DSA:3.10.20.90 | - | 684 | 794 | 3.8E-31 | - |
| SMART | SM00213 | ubq_7 | 716 | 788 | 2.0E-10 | IPR000626 |
| SMART | SM00648 | surpneu2 | 186 | 239 | 1.7E-17 | IPR000061 |
| SMART | SM00648 | surpneu2 | 66 | 119 | 1.2E-26 | IPR000061 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 188 | 230 | 16.296778 | IPR000061 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 736 | 792 | 14.207658 | IPR000626 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 68 | 110 | 19.266228 | IPR000061 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 691 | - | - |
| Coils | Coil | Coil | 351 | 371 | - | - |
| Coils | Coil | Coil | 272 | 292 | - | - |
| Coils | Coil | Coil | 25 | 45 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14650.1 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein. | 0 |
| RefSeq | XP_017227612.1 | PREDICTED: probable splicing factor 3A subunit 1 [Daucus carota subsp. sativus] | 0 |
| Q8RXF1 | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At1g14650 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U8GPG0 | LOW QUALITY PROTEIN: probable splicing factor 3A subunit 1 OS=Capsicum annuum OX=4072 GN=LOC107870876 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 51.525791 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 36.769405 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 39.662548 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 39.377354 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 42.903316 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 40.945 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 35.927498 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 36.285843 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 68.392937 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 67.945541 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 66.658302 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 73.662071 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 72.516319 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 56.831787 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.602102 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.931416 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 20.637589 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 23.335052 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.928337 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 25.981544 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 24.150637 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.772661 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 27.843302 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 27.107025 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 25.506226 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.655457 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.53916 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 21.557213 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 28.976982 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.549165 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 18.066462 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.602451 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 34.714249 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 27.434042 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 46.404026 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.63969 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 13.873696 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 17.639698 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 34.09874 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 22.386818 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.209455 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 42.852226 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 31.330454 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 36.917007 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 29.10158 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 35.843037 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 30.836655 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 36.425804 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 30.675337 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 27.038555 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg22401, jg22404, jg22430 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4793 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035218 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g025280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23856, Sbi_jg7688 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12337 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001198 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51992, Sgl57295, Sgl66083, Sgl70397 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016586, gene:ENSEOMG00000019387 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0019100, CQ.Regalona.r1.2AG0020840 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30013900 |
| Apiaceae | Apium graveolens | 2 | Ag7G00461, Ag9G02531 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G003620, COCNU_08G006030 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704394, gene-LOC103714453, gene-LOC120112891 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.181.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G12418 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G14640.1, AT1G14650.1, AT4G16200.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10006856m.g.v1.0, Thhalv10014821m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13010.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g006090.2N, BniB06g039930.2N, BniB08g033860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1536 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1567 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g00160 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0015s00045.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11136 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.40 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00006894, Pov_00012007, Pov_00021971 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08911, Lb2G08914 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.908, BH02.1217, CH02.1345 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0004520, gene-QOZ80_1BG0052950 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0323810.1 |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_013974, gene-QYE76_013975, gene-QYE76_013977 ... |
| Poaceae | Oryza coarctata | 2 | Oco02G007630, Oco03G006640 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g14780.2 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G112000, gene-BS78_03G112100 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604009, Pt_Chr0605275 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G026650, Chr03G001540, Chr05G004380 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G316600, Tel3E01G316800, Tel3E01G828000 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG071520, gene_TRIDC3AG071530 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G503600.1, TraesCS3B02G211900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb128190_P001, Zm00001eb333220_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24525 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9698 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1122, evm.TU.LG09.852, evm.TU.LG10.429 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g00260, gene.Posoc04g22410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.661, evm.TU.Scaffold_17_RagTag.663 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11544 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11300, nbisL1-mrna-17191 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12282, nbisL1-mrna-12283, nbisL1-mrna-19975 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.35 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008749 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10757, nbisL1-mrna-985 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-14386, nbisL1-mrna-8339, nbisL1-mrna-8340 |
| Salicaceae | Populus euphratica | 4 | populus_peu13954, populus_peu13956, populus_peu23146 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621140 |
| Solanaceae | Solanum chilense | 1 | SOLCI000151400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011251, gene-LOC107017700 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.18967_chr07_+, gene_10054, gene_9691 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1074 |
| Zosteraceae | Zostera marina | 1 | Zosma06g28480.v3.1 |