halophFGD

Basic Information

Locus ID: Ag7G00454

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: eukaryotic translation initiation factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	18548655	18549098	-	Ag7G00454

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.71	16,263.73 Da	37.99	103.38	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01887	IF2_eIF5B	25	148	2.05829E-63	-
Pfam	PF00009	Elongation factor Tu GTP binding domain	26	148	1.7E-23	IPR000795
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	21	148	5.95E-39	IPR027417
Gene3D	G3DSA:3.40.50.300	-	21	148	8.7E-42	IPR027417
TIGRFAM	TIGR00231	small_GTP: small GTP-binding protein domain	27	148	1.6E-15	IPR005225
ProSiteProfiles	PS51722	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	22	148	35.564293	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	142	148	5.7E-8	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	26	39	5.7E-8	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	106	117	5.7E-8	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	90	100	5.7E-8	IPR000795

Gene Ontology

Molecular Function:

GO:0003924 (GTPase activity) GO:0005525 (GTP binding)

KEGG Pathway

KO Term:

K02703 (photosystem II P680 reaction center D1 protein [EC:1.10.3.9])

Pathway:

ko00195 (Photosynthesis) map00195 (Photosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00161 (Photosystem II)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G76810.1	eukaryotic translation initiation factor 2 (eIF-2) family protein.
RefSeq	XP_017247632.1	PREDICTED: eukaryotic translation initiation factor 5B-like [Daucus carota subsp. sativus]
Swiss-Prot	G0S8G9	Eukaryotic translation initiation factor 5B OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=CTHT_0029840 PE=1 SV=2
TrEMBL	A0A392MCA6	Eukaryotic translation initiation factor 5B-like (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0005928 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	19.352566	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.220601	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	17.459564	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	10.551598	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	16.321344	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	15.303833	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	13.495469	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	17.241537	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.998642	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.347324	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.060099	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.11117	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.368781	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.348316	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.785391	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.047687	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.940238	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.248335	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.880114	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.483184	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	4.181402	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.208692	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.169682	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.202383	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.719131	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	4.61679	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.452585	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	2.884933	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.787046	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.704687		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.838004		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.013026		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.09452		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.602718		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.431637		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.094935		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.223087		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.436686		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.917527	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.793133	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	10.51008	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.402738	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	37.398338	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	11.988291	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	9.204651	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	10.976158	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	11.769648	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	11.234158	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.988338	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg6070
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15301, gene_245
Amaranthaceae	Atriplex hortensis	3	Ah003421, Ah018262, Ah018421
Amaranthaceae	Beta vulgaris	3	BVRB_3g050350, BVRB_7g173810, BVRB_9g202210
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg14893, Sbi_jg28723, Sbi_jg2920, Sbi_jg31007 ... Sbi_jg31009, Sbi_jg55702
Amaranthaceae	Salicornia europaea	7	Seu_jg22981, Seu_jg22982, Seu_jg26226, Seu_jg6833 ... Seu_jg6939, Seu_jg6940, Seu_jg6959
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004375, GOSA_00004376, GOSA_00017916
Amaranthaceae	Suaeda glauca	2	Sgl01135, Sgl06220
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000003077, gene:ENSEOMG00000021883 ... gene:ENSEOMG00000022784, gene:ENSEOMG00000031997, gene:ENSEOMG00000044257
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0006900, CQ.Regalona.r1.3AG0006930
Anacardiaceae	Pistacia vera	1	pistato.v30037970
Apiaceae	Apium graveolens	6	Ag3G00748, Ag3G00749, Ag3G01911, Ag4G02445, Ag4G02446 ... Ag7G00454
Arecaceae	Cocos nucifera	2	COCNU_14G000450, scaffold033353G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103720357, gene-LOC103721040
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1583.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G06402, Ftri12G27292, Ftri9G10744
Brassicaceae	Arabidopsis thaliana	5	AT1G21160.1, AT1G76720.1, AT1G76810.1, AT1G76820.1 ... AT2G27700.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10006634m.g.v1.0, Thhalv10018018m.g.v1.0 ... Thhalv10021382m.g.v1.0, Thhalv10022147m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g31970.v2.2
Brassicaceae	Brassica nigra	4	BniB02g016020.2N, BniB02g016030.2N, BniB03g009000.2N ... BniB05g073240.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1632
Casuarinaceae	Casuarina glauca	1	Cgl08G1673
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g04590
Dunaliellaceae	Dunaliella salina	1	Dusal.0041s00031.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g24390
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.718
Plantaginaceae	Plantago ovata	8	Pov_00011481, Pov_00011596, Pov_00011597, Pov_00011598 ... Pov_00012015, Pov_00015017, Pov_00015018, Pov_00023099
Plumbaginaceae	Limonium bicolor	2	Lb2G10385, Lb3G16650
Poaceae	Echinochloa crus-galli	6	AH05.3560, BH05.1205, BH05.3558, CH01.2697, CH05.1503 ... CH05.3712
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0360980, gene-QOZ80_5AG0391570 ... gene-QOZ80_5BG0409430, gene-QOZ80_5BG0439620
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0094710.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015006, gene-QYE76_042706
Poaceae	Oryza coarctata	3	Oco02G013470, Oco09G018380, Oco10G018310
Poaceae	Oryza sativa	4	LOC_Os01g40150.1, LOC_Os01g40170.1, LOC_Os05g51500.1 ... LOC_Os12g31880.1
Poaceae	Paspalum vaginatum	3	gene-BS78_08G078500, gene-BS78_08G078600 ... gene-BS78_09G258100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0505892, Pt_Chr0703558
Poaceae	Sporobolus alterniflorus	11	Chr01G016380, Chr04G015670, Chr04G024780, Chr06G016320 ... Chr06G016340, Chr06G016350, Chr07G023610, Chr0G020300, Chr0G030010, Chr12G020410, Chr18G015880
Poaceae	Thinopyrum elongatum	4	Tel1E01G740900, Tel1E01G741100, Tel1E01G742100 ... Tel7E01G813100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG064300, gene_TRIDC1BG073510 ... gene_TRIDC7AG066570, gene_TRIDC7BG060760
Poaceae	Triticum aestivum	6	TraesCS1A02G438600.2, TraesCS1B02G472500.1 ... TraesCS1D02G446400.1, TraesCS1D02G446900.2, TraesCS7A02G479800.2, TraesCS7B02G382100.1
Poaceae	Zea mays	1	Zm00001eb345280_P001
Poaceae	Zoysia japonica	2	nbis-gene-13527, nbis-gene-48615
Poaceae	Zoysia macrostachya	2	Zma_g25096, Zma_g27484
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.629, evm.TU.LG03.129, evm.TU.LG03.17 ... evm.TU.LG04.140, evm.TU.LG04.143
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g14760
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.1614
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-19623, nbisL1-mrna-8731
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-402, nbisL1-mrna-8952
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15078, nbisL1-mrna-15079, nbisL1-mrna-8068 ... nbisL1-mrna-8069
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000018l.50, evm.TU.utg000023l.36
Rhizophoraceae	Kandelia obovata	1	Maker00003101
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19721, nbisL1-mrna-9392
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23779
Salicaceae	Populus euphratica	5	populus_peu00417, populus_peu18706, populus_peu18723 ... populus_peu29630, populus_peu29631
Solanaceae	Lycium barbarum	1	gene-LOC132636476
Solanaceae	Solanum chilense	2	SOLCI001496400, SOLCI003795700
Solanaceae	Solanum pennellii	4	gene-LOC107014299, gene-LOC107014401, gene-LOC107017076 ... gene-LOC107023346
Tamaricaceae	Reaumuria soongarica	2	STRG.5392_chr02_+, gene_17626
Tamaricaceae	Tamarix chinensis	1	TC03G1943
Zosteraceae	Zostera marina	4	Zosma01g35560.v3.1, Zosma04g20870.v3.1, Zosma277g00050.v3.1 ... Zosma277g00060.v3.1