Basic Information
Locus ID:
Ag7G00443
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 15831893 | 15834912 | + | Ag7G00443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 35,429.66 Da | 52.35 | 80.76 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 233 | 275 | 1.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 281 | 1.62E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 281 | 2.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 234 | 274 | 2.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 234 | 275 | 12.238477 | IPR001841 |
| Coils | Coil | Coil | 100 | 120 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20910.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017228315.1 | PREDICTED: E3 ubiquitin-protein ligase AIP2 [Daucus carota subsp. sativus] | 0 |
| Q8RXD3 | E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana OX=3702 GN=AIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162B9N7 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004369 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 28.31135 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 22.518789 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 30.599258 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 29.394228 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 33.373268 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.821352 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 23.313267 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 24.714466 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.451382 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.68454 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.794895 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 28.984043 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 34.838848 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.871216 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 23.365944 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 24.81637 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 25.756998 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.352013 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 25.563263 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 36.846466 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 31.733612 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 28.755062 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 31.67046 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 33.829395 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 33.178799 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.929239 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.98917 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.1159 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.659517 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.558272 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.789037 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.154305 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.889675 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.256342 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.312614 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.505043 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.424528 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.042346 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.902167 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.243889 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.199782 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 210.809967 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 163.817245 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.416771 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.609974 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 156.114197 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.813442 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 38.504631 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 41.196533 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 27.636023 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4501 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2631 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020232 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg5053, Sbi_jg6824 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13008 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003846 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00345, Sgl00410, Sgl05402, Sgl05436 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012952, gene:ENSEOMG00000030612 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0014030, CQ.Regalona.r1.3BG0014040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30208620 |
| Apiaceae | Apium graveolens | 2 | Ag7G00441, Ag7G00443 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G005160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712582 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.345.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri7G14110, FtriNA01204 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G20910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014170m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23610.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1767 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1894 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g11200 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0556s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04610 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.715 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013742 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2025, BH03.2380, CH03.2350 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0536090, gene-QOZ80_6BG0489370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005359 |
| Poaceae | Oryza coarctata | 2 | Oco17G005540, Oco18G005630 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26400.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701965 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G009350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G355200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034840, gene_TRIDC5BG036530 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G216000.1, TraesCS5B02G214500.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb099970_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30741 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30371 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.1474 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g27710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.635 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13852 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8891 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.453 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014891 |
| Salicaceae | Populus euphratica | 3 | populus_peu12552, populus_peu38094, populus_peu38224 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635751 |
| Solanaceae | Solanum chilense | 1 | SOLCI004680800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026823 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2589_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1409 |
| Zosteraceae | Zostera marina | 1 | Zosma01g05110.v3.1 |