Basic Information
Locus ID:
Ag7G00441
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF1639)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 15724602 | 15728529 | + | Ag7G00441 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.50 | 55,552.14 Da | 55.85 | 68.68 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07797 | Protein of unknown function (DUF1639) | 437 | 486 | 1.8E-21 | IPR012438 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 514 | - | - |
| Coils | Coil | Coil | 103 | 123 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20910.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017230350.1 | PREDICTED: uncharacterized protein LOC108205080 [Daucus carota subsp. sativus] | 0 |
| Q8RXD3 | E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana OX=3702 GN=AIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166FUE7 | MBD domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001252 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.035659 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.117611 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.291469 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.639656 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.974282 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.893064 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.06935 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.053877 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.655408 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.655535 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.308264 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.908862 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.554594 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.191542 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.190837 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.822999 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.070592 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.577191 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.408777 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.155669 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.443314 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.211372 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.282722 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.918057 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.987013 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.102325 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.560449 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.591501 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.792714 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.530861 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.677254 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.749741 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.701479 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.514275 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.295398 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.657537 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.877404 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.327176 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.943888 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.248828 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.087821 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.880302 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.828249 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.482754 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.576714 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.964301 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.27986 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.129311 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.47911 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.469283 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4501 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2631 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020232 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg5053, Sbi_jg6824 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13008 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003846 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00345, Sgl00410, Sgl05402, Sgl05436 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012952, gene:ENSEOMG00000030612 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0014030, CQ.Regalona.r1.3BG0014040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30208620 |
| Apiaceae | Apium graveolens | 2 | Ag7G00441, Ag7G00443 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G005160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712582 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.345.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri7G14110, FtriNA01204 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G20910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014170m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23610.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1767 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1894 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g11200 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0556s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04610 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.715 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013742 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2025, BH03.2380, CH03.2350 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0536090, gene-QOZ80_6BG0489370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005359 |
| Poaceae | Oryza coarctata | 2 | Oco17G005540, Oco18G005630 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26400.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701965 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G009350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G355200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034840, gene_TRIDC5BG036530 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G216000.1, TraesCS5B02G214500.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb099970_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30741 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30371 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.1474 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g27710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.635 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13852 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8891 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.453 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014891 |
| Salicaceae | Populus euphratica | 3 | populus_peu12552, populus_peu38094, populus_peu38224 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635751 |
| Solanaceae | Solanum chilense | 1 | SOLCI004680800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026823 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2589_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1409 |
| Zosteraceae | Zostera marina | 1 | Zosma01g05110.v3.1 |