halophFGD

Basic Information

Locus ID: Ag7G00437

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	15586343	15590402	-	Ag7G00437

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.78	109,001.15 Da	29.53	101.91	-0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00560	Leucine Rich Repeat	251	273	1.3	IPR001611
Pfam	PF00560	Leucine Rich Repeat	371	391	1.3	IPR001611
Pfam	PF00560	Leucine Rich Repeat	130	152	1.5	IPR001611
Pfam	PF13855	Leucine rich repeat	492	551	3.4E-7	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	39	77	4.7E-7	IPR013210
Pfam	PF00560	Leucine Rich Repeat	178	196	0.16	IPR001611
Pfam	PF00069	Protein kinase domain	709	977	5.3E-46	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	699	979	4.86E-73	IPR011009
SUPERFAMILY	SSF52047	RNI-like	86	407	2.98E-61	-
SUPERFAMILY	SSF52058	L domain-like	314	637	5.95E-51	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	785	989	1.1E-59	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	673	784	5.9E-21	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	192	290	1.3E-30	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	390	632	4.6E-60	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	291	389	3.0E-29	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	39	191	6.7E-38	IPR032675
SMART	SM00369	LRR_typ_2	273	296	140.0	IPR003591
SMART	SM00369	LRR_typ_2	128	151	140.0	IPR003591
SMART	SM00369	LRR_typ_2	370	393	170.0	IPR003591
SMART	SM00369	LRR_typ_2	345	369	20.0	IPR003591
SMART	SM00369	LRR_typ_2	176	199	160.0	IPR003591
SMART	SM00220	serkin_6	707	983	7.4E-32	IPR000719
SMART	SM00369	LRR_typ_2	514	538	58.0	IPR003591
SMART	SM00369	LRR_typ_2	200	224	400.0	IPR003591
SMART	SM00369	LRR_typ_2	297	320	47.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	707	987	36.343475	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	829	841	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G20270.1	Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function.
RefSeq	XP_017230667.1	PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Daucus carota subsp. sativus]
Swiss-Prot	O65440	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3
TrEMBL	F6HGD8	Protein kinase domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_01s0010g00330 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.804246	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.964235	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.271682	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.592824	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.676409	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.446081	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.47541	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.697165	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	57.172756	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	58.481789	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	67.288338	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	46.902161	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	37.771103	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	35.515839	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.414695	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.076914	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	14.247252	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	9.183115	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.054603	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	8.451932	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	8.532375	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	60.295448	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	71.527191	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	75.74202	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	54.882912	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	24.2805	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	22.49868	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	18.091942	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	27.472891	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.320967		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.503719		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.665995		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.399966		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	12.762571		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.645344		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.391596		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.273166		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.427381		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	22.344744	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.217277	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.250526	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.361503	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.713516	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	6.694962	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	12.423752	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.300875	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	18.807404	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	34.727795	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	45.323223	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	36.700752	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg11758, jg19610, jg26426, jg30065, jg30746, jg39891, jg6361 ... jg6363
Aizoaceae	Mesembryanthemum crystallinum	3	gene_16948, gene_17596, gene_8739
Amaranthaceae	Atriplex hortensis	3	Ah013056, Ah014263, Ah036212
Amaranthaceae	Beta vulgaris	3	BVRB_3g054500, BVRB_6g153050, BVRB_8g193050
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg25558, Sbi_jg40027, Sbi_jg43004, Sbi_jg45613 ... Sbi_jg55355, Sbi_jg9379
Amaranthaceae	Salicornia europaea	3	Seu_jg11458, Seu_jg14308, Seu_jg19228
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002071, GOSA_00011040, GOSA_00014059
Amaranthaceae	Suaeda glauca	9	Sgl12184, Sgl17556, Sgl35720, Sgl35759, Sgl41038, Sgl41074 ... Sgl41926, Sgl41928, Sgl46722
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000002694, gene:ENSEOMG00000003754 ... gene:ENSEOMG00000011729, gene:ENSEOMG00000012153, gene:ENSEOMG00000018747, gene:ENSEOMG00000026552, gene:ENSEOMG00000032275, gene:ENSEOMG00000033747, gene:ENSEOMG00000044617, gene:ENSEOMG00000048142
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0021270, CQ.Regalona.r1.1BG0003210 ... CQ.Regalona.r1.6BG0000260, CQ.Regalona.r1.8AG0022690, CQ.Regalona.r1.8BG0019730
Anacardiaceae	Pistacia vera	4	pistato.v30049240, pistato.v30078530, pistato.v30105510 ... pistato.v30221220
Apiaceae	Apium graveolens	6	Ag1G00807, Ag4G01182, Ag5G00396, Ag6G02752, Ag7G00437 ... Ag9G01473
Arecaceae	Cocos nucifera	10	COCNU_02G011840, COCNU_06G005200, COCNU_08G008690 ... COCNU_09G004300, COCNU_13G004880, COCNU_14G003460, COCNU_14G009840, COCNU_15G003810, contig69595135G000010, scaffold011848G000010
Arecaceae	Phoenix dactylifera	11	gene-LOC103701386, gene-LOC103704305, gene-LOC103704810 ... gene-LOC103705430, gene-LOC103705711, gene-LOC103707653, gene-LOC103709512, gene-LOC103711058, gene-LOC103714188, gene-LOC103720466, gene-LOC103720609
Asparagaceae	Asparagus officinalis	7	AsparagusV1_01.1199.V1.1, AsparagusV1_01.472.V1.1 ... AsparagusV1_03.2387.V1.1, AsparagusV1_03.715.V1.1, AsparagusV1_04.674.V1.1, AsparagusV1_08.1765.V1.1, AsparagusV1_09.311.V1.1
Asteraceae	Flaveria trinervia	6	Ftri13G19580, Ftri15G04764, Ftri15G08168, Ftri17G12030 ... Ftri17G19305, Ftri18G02805
Brassicaceae	Arabidopsis thaliana	4	AT1G75820.1, AT3G49670.1, AT4G20270.1, AT5G65700.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003584m.g.v1.0, Thhalv10010092m.g.v1.0 ... Thhalv10018069m.g.v1.0, Thhalv10024310m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g28800.v2.2, Sp5g30940.v2.2, Sp7g18630.v2.2
Brassicaceae	Brassica nigra	6	BniB02g071030.2N, BniB02g075540.2N, BniB03g022700.2N ... BniB03g054460.2N, BniB05g016330.2N, BniB06g014010.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G0863, Ceq04G0006, Ceq06G0414, Ceq07G2209
Casuarinaceae	Casuarina glauca	4	Cgl03G0943, Cgl04G0026, Cgl06G0433, Cgl07G2415
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g14250, gene.Cymno06g01120, gene.Cymno08g06600 ... gene.Cymno14g06030
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g08770, gene.Thate03g12070, gene.Thate06g14140 ... gene.Thate08g21470
Malvaceae	Hibiscus hamabo Siebold & Zucc.	6	nbisL1-mrna-10096, nbisL1-mrna-10592, nbisL1-mrna-12499 ... nbisL1-mrna-1371, nbisL1-mrna-6687, nbisL1-mrna-7154
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.2631, evm.TU.LG06.189, evm.TU.LG08.886 ... evm.TU.LG12.267
Plantaginaceae	Plantago ovata	4	Pov_00001929, Pov_00020656, Pov_00024127, Pov_00029957
Plumbaginaceae	Limonium bicolor	6	Lb0G38336, Lb1G05827, Lb3G19007, Lb5G28411, Lb5G29329 ... Lb8G36419
Poaceae	Echinochloa crus-galli	17	AH01.4438, AH01.61, AH03.173, AH04.874, AH06.2994, BH01.579 ... BH03.223, BH04.839, BH06.2772, CH01.2736, CH01.5040, CH01.557, CH03.285, CH04.849, CH05.1467, CH06.3128, Contig192.75
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_3AG0214190, gene-QOZ80_3AG0239820 ... gene-QOZ80_3BG0259340, gene-QOZ80_3BG0288210, gene-QOZ80_6AG0551000, gene-QOZ80_6BG0504570, gene-QOZ80_7AG0554900, gene-QOZ80_7BG0585970, gene-QOZ80_9AG0680380, gene-QOZ80_9BG0705900
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0095240.1, HORVU.MOREX.r3.2HG0154160.1 ... HORVU.MOREX.r3.4HG0344790.1, HORVU.MOREX.r3.4HG0394400.1, HORVU.MOREX.r3.5HG0513800.1, HORVU.MOREX.r3.7HG0747230.1
Poaceae	Lolium multiflorum	6	gene-QYE76_018783, gene-QYE76_036805, gene-QYE76_042409 ... gene-QYE76_064244, gene-QYE76_069565, gene-QYE76_069601
Poaceae	Oryza coarctata	12	Oco05G007140, Oco05G024830, Oco06G007390, Oco06G025750 ... Oco10G018530, Oco11G017370, Oco12G017580, Oco13G001030, Oco14G001100, Oco21G003510, Oco22G004260, Oco22G004270
Poaceae	Oryza sativa	6	LOC_Os03g12730.1, LOC_Os03g56270.1, LOC_Os05g51740.1 ... LOC_Os06g50340.1, LOC_Os07g04190.1, LOC_Os11g12620.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G064900, gene-BS78_01G429000 ... gene-BS78_02G028200, gene-BS78_05G121500, gene-BS78_09G261500, gene-BS78_10G279900
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0101886, Pt_Chr0101893, Pt_Chr0107414, Pt_Chr0203199 ... Pt_Chr0303482, Pt_Chr0303503, Pt_Chr0401704, Pt_Chr0401730, Pt_Chr0502019
Poaceae	Sporobolus alterniflorus	12	Chr01G003910, Chr01G016580, Chr01G028550, Chr04G029650 ... Chr07G018950, Chr10G022240, Chr11G000270, Chr12G010890, Chr12G036220, Chr24G001850, Chr28G000660, Chr31G003010
Poaceae	Thinopyrum elongatum	6	Tel1E01G752100, Tel2E01G469600, Tel4E01G143600 ... Tel4E01G405600, Tel5E01G643000, Tel7E01G929800
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG065190, gene_TRIDC1BG074470 ... gene_TRIDC2AG038360, gene_TRIDC2BG039770, gene_TRIDC4AG009410, gene_TRIDC4AG035800, gene_TRIDC4BG014280, gene_TRIDC4BG041330, gene_TRIDC5AG059160, gene_TRIDC5BG063350, gene_TRIDC7AG074410, gene_TRIDC7BG070720
Poaceae	Triticum aestivum	17	TraesCS1A02G444500.1, TraesCS1B02G479300.1 ... TraesCS1D02G452700.1, TraesCS2A02G268300.1, TraesCS2B02G266700.1, TraesCS2D02G255900.1, TraesCS4A02G059000.1, TraesCS4A02G224800.1, TraesCS4B02G091400.1, TraesCS4B02G234600.1, TraesCS4D02G088400.1, TraesCS4D02G235800.1, TraesCS5A02G407500.2, TraesCS5B02G412400.1, TraesCS5D02G417400.1, TraesCS7A02G533800.1, TraesCS7D02G521200.1
Poaceae	Zea mays	8	Zm00001eb009640_P001, Zm00001eb059050_P001 ... Zm00001eb112170_P001, Zm00001eb167830_P001, Zm00001eb213770_P001, Zm00001eb228140_P001, Zm00001eb297830_P001, Zm00001eb299510_P001
Poaceae	Zoysia japonica	1	nbis-gene-16330
Poaceae	Zoysia macrostachya	7	Zma_g17752, Zma_g2670, Zma_g27503, Zma_g33419, Zma_g377 ... Zma_g4093, Zma_g4714
Portulacaceae	Portulaca oleracea	9	evm.TU.LG02.1998, evm.TU.LG03.1303, evm.TU.LG05.994 ... evm.TU.LG07.961, evm.TU.LG12.304, evm.TU.LG12.345, evm.TU.LG15.875, evm.TU.LG23.253, evm.TU.LG25.335
Posidoniaceae	Posidonia oceanica	5	gene.Posoc03g26850, gene.Posoc04g07400, gene.Posoc05g17600 ... gene.Posoc06g09490, gene.Posoc09g05350
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_1_RagTag.1039, evm.TU.Scaffold_2_RagTag.1494 ... evm.TU.Scaffold_3_RagTag.1162, evm.TU.Scaffold_6_RagTag.1744, evm.TU.Scaffold_7_RagTag.421
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-16394, nbisL1-mrna-29917, nbisL1-mrna-3747 ... nbisL1-mrna-6564, nbisL1-mrna-811
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-13430, nbisL1-mrna-2717, nbisL1-mrna-5614 ... nbisL1-mrna-6042, nbisL1-mrna-9742
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12025, nbisL1-mrna-13055, nbisL1-mrna-18897 ... nbisL1-mrna-21165, nbisL1-mrna-2416
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000002l.179, evm.TU.utg000009l.425 ... evm.TU.utg000011l.1061, evm.TU.utg000016l.891, evm.TU.utg000019l.542
Rhizophoraceae	Kandelia obovata	5	Maker00001979, Maker00006023, Maker00007039, Maker00011510 ... Maker00016277
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17848, nbisL1-mrna-19229, nbisL1-mrna-20234 ... nbisL1-mrna-21143, nbisL1-mrna-22961
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-1855, nbisL1-mrna-19166, nbisL1-mrna-20072 ... nbisL1-mrna-21774, nbisL1-mrna-3343
Salicaceae	Populus euphratica	6	populus_peu03852, populus_peu08254, populus_peu15370 ... populus_peu23730, populus_peu33021, populus_peu34688
Solanaceae	Lycium barbarum	5	gene-LOC132598641, gene-LOC132614125, gene-LOC132616782 ... gene-LOC132625111, gene-LOC132628132
Solanaceae	Solanum chilense	5	SOLCI000770700, SOLCI001434800, SOLCI003755300 ... SOLCI004555800, SOLCI006753100
Solanaceae	Solanum pennellii	5	gene-LOC107007826, gene-LOC107008045, gene-LOC107011033 ... gene-LOC107014930, gene-LOC107017835
Tamaricaceae	Reaumuria soongarica	5	STRG.16334_chr06_-, STRG.31292_chr11_+, STRG.723_chr01_- ... STRG.8855_chr03_-, gene_4260
Tamaricaceae	Tamarix chinensis	5	TC01G0326, TC04G2890, TC06G1252, TC09G0303, TC11G0605
Zosteraceae	Zostera marina	3	Zosma01g22140.v3.1, Zosma02g04360.v3.1, Zosma05g29240.v3.1