halophFGD

Basic Information

Locus ID: Ag7G00423

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-box Kelch-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	14264142	14265530	-	Ag7G00423

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.52	53,466.19 Da	33.43	87.45	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	36	83	8.24E-12	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	28	76	1.3E-6	-
SMART	SM00256	fbox_2	37	76	5.2E-4	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	145	370	6.8E-18	IPR017451
ProSiteProfiles	PS50181	F-box domain profile.	31	76	9.947874	IPR001810
MobiDBLite	mobidb-lite	consensus disorder prediction	1	19	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	26	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G47790.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_017250223.1	PREDICTED: putative F-box protein At4g38870 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FZF8	Putative F-box protein At1g47790 OS=Arabidopsis thaliana OX=3702 GN=At1g47790 PE=4 SV=1
TrEMBL	A0A6L5B983	F-box domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_004719 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.362474	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.608401	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.243594	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.233277	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.750435	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.388486	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.591952	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.177144	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.771971	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.262432	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.227824	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.016071	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.411884	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.60836	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.479463	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.100715	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.632422	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.253586	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.826776	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.570302	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.124882	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.909546	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.976285	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.13521	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.800981	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.814572	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.150973	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.288261	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.588207	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.103062		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.542035		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.398063		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.895151		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.428731		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.535144		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.259859		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.075192		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.189691		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.457956	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.301961	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.14226	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.412719	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.725378	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.349966	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.901273	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.751105	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.395502	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.620791	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.188323	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.587977	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	28	Ag11G04604, Ag1G01383, Ag3G00069, Ag3G01716, Ag5G02836 ... Ag6G00270, Ag6G00271, Ag6G00272, Ag7G00151, Ag7G00152, Ag7G00420, Ag7G00421, Ag7G00422, Ag7G00423, Ag7G00424, Ag7G02451, Ag9G00609, Ag9G00610, Ag9G02156, Ag9G02524, Ag9G02573, Ag9G02632, Ag9G02633, Ag9G02645, Ag9G02649, AgUnG00927, AgUnG00928, AgUnG01362