Basic Information
Locus ID:
Ag7G00415
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 14069808 | 14080062 | + | Ag7G00415 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 104,825.19 Da | 50.81 | 106.20 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 174 | 212 | 1.6E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 171 | 202 | 4.97E-5 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 651 | 948 | 3.74E-24 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 416 | 569 | 4.32E-15 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 193 | 411 | 8.63E-25 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 520 | 751 | 2.59E-26 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 727 | 814 | 2.5E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 489 | 641 | 4.8E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 815 | 954 | 4.9E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 643 | 726 | 1.3E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 168 | 335 | 4.0E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 336 | 488 | 1.6E-20 | IPR032675 |
| SMART | SM00256 | fbox_2 | 172 | 212 | 1.3E-7 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 324 | 343 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 344 | 369 | 0.015 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 596 | 621 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 659 | 684 | 210.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 526 | 551 | 47.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 733 | 758 | 81.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 916 | 941 | 44.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 554 | 579 | 69.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 685 | 710 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 417 | 442 | 23.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 370 | 395 | 0.0018 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33210.1 | F-box family protein. Encodes SLOMO (SLOW MOTION), a F-box protein required for auxin homeostasis and normal timing of lateral organ initiation at the shoot meristem. | 0 |
| RefSeq | XP_017229627.1 | PREDICTED: F-box/LRR-repeat protein 15 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q9SMY8 | F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana OX=3702 GN=FBL15 PE=2 SV=2 | 0 | |
| TrEMBL | A0A162B9P4 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004379 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 32.327545 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.30533 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.984373 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.195627 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.581579 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.733242 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.560553 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.118723 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 44.157562 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 46.288933 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 51.549992 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 45.346786 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 39.449749 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 37.642834 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.157482 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.938811 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.475307 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.483761 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.312954 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.134901 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.548078 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.93363 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 19.766369 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.391083 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.824239 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.584234 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.452206 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.817272 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.67491 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.558049 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.897965 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.032836 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.533885 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.054704 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.812104 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.27297 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.873834 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.79814 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.042578 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.051636 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.172612 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.642422 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.065012 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 24.943466 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 26.293196 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.798409 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.284492 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.180639 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.116299 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.152813 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23985, jg7948 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13123 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034449 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033880 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20404, Sbi_jg23382 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17160 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009067 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63604, Sgl68094 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018783, gene:ENSEOMG00000020873 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013590, CQ.Regalona.r1.2BG0015670 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30260920 |
| Apiaceae | Apium graveolens | 2 | Ag7G00415, Ag9G02579 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G008750 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712630 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1206.V1.1, AsparagusV1_07.3634.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G03550 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G33210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024312m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g30950.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g086200.2N, BniB03g009580.2N, BniB03g009590.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2146 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2288 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g10160 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g25650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.688 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013382 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G38195, Lb0G38200, Lb4G24789, Lb4G25728 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2324, BH01.55, CH01.2595 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0123330, gene-QOZ80_2BG0178610 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0037610.1 |
| Poaceae | Oryza coarctata | 1 | Oco19G003630 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g25680.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_K228700, gene-BS78_K229100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502397 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G014600, Chr09G008540, Chr13G016430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G249600 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG024720 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G136200.1, TraesCS1B02G154100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb048660_P002, Zm00001eb223490_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27842, nbis-gene-46710 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13175, Zma_g15997 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG07.851, evm.TU.LG15.83, evm.TU.LG22.1514 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g04360 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.658 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13830, nbisL1-mrna-25865 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16187, nbisL1-mrna-19273 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1334, nbisL1-mrna-8912 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.703, evm.TU.utg000033l.470 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000390, Maker00014941 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2055, nbisL1-mrna-3918 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-8051, nbisL1-mrna-9408 |
| Salicaceae | Populus euphratica | 3 | populus_peu04955, populus_peu12579, populus_peu22388 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635981 |
| Solanaceae | Solanum chilense | 1 | SOLCI005901900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028506 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13365, gene_18044 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1484 |
| Zosteraceae | Zostera marina | 1 | Zosma03g25640.v3.1 |