Basic Information
Locus ID:
Ag7G00341
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Clathrin interactor EPSIN
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 10753668 | 10761029 | + | Ag7G00341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 59,344.58 Da | 38.16 | 60.91 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03571 | ENTH | 28 | 144 | 1.00537E-55 | - |
| Pfam | PF01417 | ENTH domain | 27 | 147 | 8.6E-41 | IPR013809 |
| SUPERFAMILY | SSF48464 | ENTH/VHS domain | 7 | 152 | 1.24E-45 | IPR008942 |
| Gene3D | G3DSA:1.25.40.90 | - | 24 | 163 | 1.7E-51 | IPR008942 |
| SMART | SM00273 | enth_2 | 26 | 152 | 3.1E-48 | IPR013809 |
| ProSiteProfiles | PS50942 | ENTH domain profile. | 20 | 152 | 38.194359 | IPR013809 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 281 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G11710.1 | ENTH/VHS family protein. EPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated with actin filaments and with the Golgi complex. Expressed in most tissues. | 0 |
| RefSeq | XP_017229883.1 | PREDICTED: clathrin interactor EPSIN 1 [Daucus carota subsp. sativus] | 0 |
| Q8VY07 | Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana OX=3702 GN=EPSIN1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166J530 | ENTH domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004452 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 39.608433 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 33.684093 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 30.15246 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 34.10181 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 35.604362 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.327021 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 23.194384 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.802088 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 72.554207 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 68.364601 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 76.142166 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 73.628746 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 65.831886 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 58.385586 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 105.985191 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 99.65036 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 103.324669 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 81.489075 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 69.545357 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 79.468307 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 66.510353 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 93.124313 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 92.776115 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 95.066368 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 85.979233 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 91.844452 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 85.043518 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 66.307121 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 93.161804 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.916523 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.916225 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.286529 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 14.919836 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 24.364393 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.610428 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.221004 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.364275 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.701951 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 42.979977 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 27.961823 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.11025 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 58.269699 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 43.367081 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 35.840019 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 35.621246 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 58.351467 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 44.761322 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 69.43293 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 63.271999 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 61.410679 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4554, jg7908 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8110 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034662 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21964, Sbi_jg29609 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15785 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018148 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63101, Sgl66854, Sgl67713 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019787, gene:ENSEOMG00000020702 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0014850, CQ.Regalona.r1.2BG0016950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30254280 |
| Apiaceae | Apium graveolens | 1 | Ag7G00341 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G004740, COCNU_06G004760, COCNU_14G003100 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711206, gene-LOC103714331 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2938.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G25242, Ftri7G19432 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G11710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013137m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g31900.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g025880.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2220 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2362 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g11850 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0309s00005.v1.0, Dusal.1316s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g34500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.859 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013545 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G36904, Lb1G05159, Lb2G08411, Lb4G26310 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3111, AH09.2179, BH02.3185, BH09.2350, CH02.3336 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0032480, gene-QOZ80_1BG0082690 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0193880.1, HORVU.MOREX.r3.3HG0287580.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_046086, gene-QYE76_055355 |
| Poaceae | Oryza coarctata | 3 | Oco02G020190, Oco07G014910, Oco08G014410 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g53670.1, LOC_Os04g51120.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G269700, gene-BS78_06G215300 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0301451, Pt_Chr0301491, Pt_Chr0602160, Pt_Chr0602545 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G010130, Chr05G023210, Chr23G003460, Chr25G003980 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G751300, Tel3E01G458500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG063240, gene_TRIDC2BG067160 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G440100.1, TraesCS2B02G461300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb071930_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26411, nbis-gene-5736 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11090, Zma_g21904 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.2330, evm.TU.LG07.1092, evm.TU.LG07.741 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21800 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.740 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13753 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8855 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-8985, nbisL1-mrna-8986 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.517 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014904 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3868 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7982 |
| Salicaceae | Populus euphratica | 1 | populus_peu12705 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600355, gene-LOC132635860 |
| Solanaceae | Solanum chilense | 1 | SOLCI000690800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003266, gene-LOC107028413 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32785_chr09_-, gene_3750 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2545, TC02G0312 |
| Zosteraceae | Zostera marina | 3 | Zosma01g22800.v3.1, Zosma05g25360.v3.1, Zosma06g11420.v3.1 |