halophFGD

Basic Information

Locus ID: Ag7G00332

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Leucine rich repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	10564051	10567662	+	Ag7G00332

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.99	113,912.28 Da	33.98	99.55	-0.08

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	101	160	7.7E-12	IPR001611
Pfam	PF00069	Protein kinase domain	697	976	2.4E-46	IPR000719
Pfam	PF08263	Leucine rich repeat N-terminal domain	38	72	4.4E-5	IPR013210
Pfam	PF13855	Leucine rich repeat	531	589	1.5E-8	IPR001611
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	688	978	1.89E-74	IPR011009
SUPERFAMILY	SSF52047	RNI-like	81	428	1.65E-61	-
SUPERFAMILY	SSF52058	L domain-like	397	601	2.38E-38	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	291	394	8.0E-26	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	184	290	1.2E-25	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	397	630	9.6E-57	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	677	774	1.6E-19	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	775	990	1.6E-62	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	34	183	1.7E-40	IPR032675
SMART	SM00369	LRR_typ_2	293	314	380.0	IPR003591
SMART	SM00369	LRR_typ_2	244	268	3.2	IPR003591
SMART	SM00220	serkin_6	695	983	2.1E-30	IPR000719
SMART	SM00369	LRR_typ_2	147	171	52.0	IPR003591
SMART	SM00369	LRR_typ_2	553	577	60.0	IPR003591
SMART	SM00369	LRR_typ_2	315	339	94.0	IPR003591
SMART	SM00369	LRR_typ_2	195	220	230.0	IPR003591
SMART	SM00369	LRR_typ_2	123	146	310.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	695	983	37.163246	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	829	841	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	701	724	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K00924 (receptor protein kinase TMK [EC:2.7.11.1])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain.
RefSeq	XP_017226186.1	PREDICTED: receptor-like protein kinase HSL1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FII5	Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana OX=3702 GN=TDR PE=1 SV=1
TrEMBL	A0A161ZSW6	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000765 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.375706	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.029286	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.364674	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.749698	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.701116	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.022449	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.062327	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	4.115343	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	4.403618	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	4.630039	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.553202	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.879495	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.922515	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.186746	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.811106	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.801812	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.331082	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.718334	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.872548	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.231109	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.856459	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.309405	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.886915	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.412485	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.667126	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.487069	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	2.267796	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.234517	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.102029		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.297001		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.232499		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.704024		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.260069		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.44004		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.516111		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.811543		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.207311		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.349453	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.955601	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.393213	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	21.474529	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	16.782341	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.667876	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.81799	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	19.271505	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.591963	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.651447	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.262212	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.297137	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg23899, jg23902, jg23903, jg31658, jg32970, jg4549
Aizoaceae	Mesembryanthemum crystallinum	16	gene_12923, gene_12924, gene_13201, gene_13202, gene_13203 ... gene_13204, gene_13223, gene_13224, gene_13225, gene_8122, gene_8123, gene_8124, gene_8125, gene_8126, gene_8127, gene_8128
Amaranthaceae	Atriplex hortensis	3	Ah035058, Ah035062, Ah035064
Amaranthaceae	Beta vulgaris	4	BVRB_2g032780, BVRB_2g032790, BVRB_2g032800, BVRB_2g032810
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg20913, Sbi_jg22871
Amaranthaceae	Salicornia europaea	1	Seu_jg16733
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00018166
Amaranthaceae	Suaeda glauca	2	Sgl62289, Sgl66836
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000018127, gene:ENSEOMG00000018775 ... gene:ENSEOMG00000019088, gene:ENSEOMG00000019717, gene:ENSEOMG00000020085, gene:ENSEOMG00000047937, gene:ENSEOMG00000049253, gene:ENSEOMG00000051765
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0015020, CQ.Regalona.r1.2AG0015040 ... CQ.Regalona.r1.2AG0015050, CQ.Regalona.r1.2BG0017130, CQ.Regalona.r1.2BG0017140, CQ.Regalona.r1.2BG0017150, CQ.Regalona.r1.2BG0017160
Anacardiaceae	Pistacia vera	12	pistato.v30168210, pistato.v30168230, pistato.v30254050 ... pistato.v30254070, pistato.v30254100, pistato.v30254130, pistato.v30257250, pistato.v30257260, pistato.v30257300, pistato.v30257330, pistato.v30257340, pistato.v30257350
Apiaceae	Apium graveolens	5	Ag7G00332, Ag7G01921, Ag8G00329, Ag9G01447, Ag9G02626
Arecaceae	Cocos nucifera	6	COCNU_02G001660, COCNU_03G014930, COCNU_06G004330 ... COCNU_06G004340, COCNU_14G002970, scaffold017116G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103698393, gene-LOC103700466, gene-LOC103706753 ... gene-LOC103710231, gene-LOC120112395
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.2682.V1.1, AsparagusV1_06.1208.V1.1 ... AsparagusV1_06.1209.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G22916, Ftri15G06208, Ftri16G03105, Ftri7G05435
Brassicaceae	Arabidopsis thaliana	1	AT5G25930.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10003585m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g21740.v2.2
Brassicaceae	Brassica nigra	4	BniB02g078280.2N, BniB02g078290.2N, BniB02g078300.2N ... BniB04g004140.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq01G0058, Ceq01G0062, Ceq03G0037, Ceq03G0038, Ceq03G0039 ... Ceq03G0040, Ceq04G2063, Ceq06G0067, Ceq06G1562
Casuarinaceae	Casuarina glauca	6	Cgl01G0022, Cgl03G0046, Cgl04G2257, Cgl06G0074, Cgl06G1619 ... Cgl06G1621
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno12g02450, gene.Cymno16g03820
Dunaliellaceae	Dunaliella salina	1	Dusal.0324s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate07g16860, gene.Thate09g16420, gene.Thate09g16430
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-252
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1159, evm.TU.LG07.840
Plantaginaceae	Plantago ovata	2	Pov_00003450, Pov_00013571
Plumbaginaceae	Limonium bicolor	6	Lb1G04714, Lb1G04727, Lb1G05171, Lb1G05195, Lb2G14154 ... Lb3G21111
Poaceae	Echinochloa crus-galli	22	AH02.3138, AH02.3139, AH05.1684, AH05.360, AH06.2008 ... AH06.2009, AH06.2296, AH07.1041, BH01.5239, BH02.3203, BH02.3204, BH05.1831, BH05.417, BH06.1839, BH07.3954, CH02.3314, CH02.3317, CH05.1927, CH05.477, CH06.2028, CH07.766, CH07.939
Poaceae	Eleusine coracana subsp. coracana	19	gene-QOZ80_1AG0032710, gene-QOZ80_1BG0082870 ... gene-QOZ80_2AG0106610, gene-QOZ80_2AG0107050, gene-QOZ80_2AG0108010, gene-QOZ80_2BG0160680, gene-QOZ80_2BG0161640, gene-QOZ80_4AG0303360, gene-QOZ80_4BG0334250, gene-QOZ80_4BG0334280, gene-QOZ80_5AG0366080, gene-QOZ80_5AG0383890, gene-QOZ80_5BG0413900, gene-QOZ80_5BG0430690, gene-QOZ80_5BG0449760, gene-QOZ80_6AG0542820, gene-QOZ80_6AG0542830, gene-QOZ80_6BG0496020, gene-QOZ80_6BG0496030
Poaceae	Hordeum vulgare	11	HORVU.MOREX.r3.1HG0006720.1.CDS1 ... HORVU.MOREX.r3.1HG0006740.1.CDS1, HORVU.MOREX.r3.1HG0006770.1.CDS1, HORVU.MOREX.r3.1HG0076630.1, HORVU.MOREX.r3.3HG0287850.1, HORVU.MOREX.r3.6HG0580210.1, HORVU.MOREX.r3.6HG0624460.1, HORVU.MOREX.r3.7HG0637550.1.CDS1, HORVU.MOREX.r3.7HG0648000.1, HORVU.MOREX.r3.7HG0673710.1, HORVU.MOREX.r3.7HG0718040.1
Poaceae	Lolium multiflorum	5	gene-QYE76_015921, gene-QYE76_015986, gene-QYE76_034443 ... gene-QYE76_034447, gene-QYE76_055320
Poaceae	Oryza coarctata	12	Oco02G020350, Oco03G005860, Oco03G006080, Oco04G006080 ... Oco04G006330, Oco04G006340, Oco09G014620, Oco10G014600, Oco11G011100, Oco12G011190, Oco12G011200, Oco12G011210
Poaceae	Oryza sativa	10	LOC_Os01g53920.1, LOC_Os02g12910.1, LOC_Os02g13420.1 ... LOC_Os02g13430.1, LOC_Os02g13460.1, LOC_Os02g13510.1, LOC_Os05g44770.1, LOC_Os06g36270.3, LOC_Os06g36310.1, LOC_Os06g36320.1
Poaceae	Paspalum vaginatum	12	gene-BS78_03G271900, gene-BS78_03G272000, gene-BS78_K050100 ... gene-BS78_04G094300, gene-BS78_04G105500, gene-BS78_07G030600, gene-BS78_08G053400, gene-BS78_08G053600, gene-BS78_08G123500, gene-BS78_09G207700, gene-BS78_10G165200, gene-BS78_10G165300
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0102051, Pt_Chr0102884, Pt_Chr0400441, Pt_Chr0400452 ... Pt_Chr0504113, Pt_Chr0600213, Pt_Chr0602247, Pt_Chr0602287, Pt_Chr0605380
Poaceae	Sporobolus alterniflorus	10	Chr02G028940, Chr03G015800, Chr05G006600, Chr05G023380 ... Chr08G015900, Chr0G009790, Chr10G009440, Chr15G023290, Chr18G014300, Chr22G003240
Poaceae	Thinopyrum elongatum	5	Tel3E01G455700, Tel5E01G585000, Tel7E01G173400 ... Tel7E01G625700, Telscf48801G000100
Poaceae	Triticum dicoccoides	13	gene_TRIDC1AG050590, gene_TRIDC1BG057420 ... gene_TRIDC2BG000240, gene_TRIDC3AG021220, gene_TRIDC3AG041020, gene_TRIDC3BG046270, gene_TRIDC4AG060560, gene_TRIDC5BG057730, gene_TRIDC6AG027350, gene_TRIDC6AG053870, gene_TRIDC6BG033510, gene_TRIDC7AG049870, gene_TRIDC7BG043940
Poaceae	Triticum aestivum	28	TraesCS1A02G342600.1, TraesCS1B02G355700.1 ... TraesCS1D02G344700.1, TraesCS2A02G001700.1.cds1, TraesCS2B02G021400.1.cds1, TraesCS3A02G276200.2, TraesCS3B02G309900.1, TraesCS3B02G310000.1, TraesCS3D02G276100.1, TraesCS3D02G276200.2, TraesCS4A02G380300.2, TraesCS4A02G381100.1, TraesCS6A02G187400.1, TraesCS6A02G359600.2, TraesCS6B02G217100.1, TraesCS6B02G392500.1, TraesCS6D02G174300.1, TraesCS6D02G342500.1, TraesCS6D02G342600.1.cds1, TraesCS7A02G028300.1.cds1, TraesCS7A02G082600.1, TraesCS7A02G356900.1, TraesCS7B02G270900.1, TraesCS7D02G077200.1, TraesCS7D02G365800.1, TraesCSU02G101700.1.cds1, TraesCSU02G175600.1, TraesCSU02G214400.1
Poaceae	Zea mays	7	Zm00001eb083330_P001, Zm00001eb153630_P001 ... Zm00001eb204350_P002, Zm00001eb239600_P001, Zm00001eb277420_P001, Zm00001eb293660_P001, Zm00001eb384580_P002
Poaceae	Zoysia japonica	5	nbis-gene-13874, nbis-gene-22917, nbis-gene-34193 ... nbis-gene-41200, nbis-gene-41201
Poaceae	Zoysia macrostachya	7	Zma_g15394, Zma_g15433, Zma_g20487, Zma_g24841, Zma_g27250 ... Zma_g32940, Zma_g8624
Portulacaceae	Portulaca oleracea	10	evm.TU.LG07.719, evm.TU.LG07.720, evm.TU.LG07.722 ... evm.TU.LG07.724, evm.TU.LG07.725, evm.TU.LG15.212, evm.TU.LG15.213, evm.TU.LG15.215, evm.TU.LG15.216, evm.TU.LG15.217
Posidoniaceae	Posidonia oceanica	4	gene.Posoc08g12490, gene.Posoc08g12500, gene.Posoc09g06650 ... gene.Posoc09g06660
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.752, evm.TU.Scaffold_4_RagTag.1896
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-13739, nbisL1-mrna-13742
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14173
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-4670, nbisL1-mrna-8996
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000008l.1081, evm.TU.utg000033l.526
Rhizophoraceae	Kandelia obovata	2	Maker00001236, Maker00015187
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-22721, nbisL1-mrna-3859
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1181, nbisL1-mrna-7972
Salicaceae	Populus euphratica	12	populus_peu04986, populus_peu04987, populus_peu05355 ... populus_peu05356, populus_peu05357, populus_peu05367, populus_peu05368, populus_peu05369, populus_peu05371, populus_peu05381, populus_peu05382, populus_peu12719
Solanaceae	Lycium barbarum	12	gene-LOC132599916, gene-LOC132600349, gene-LOC132600351 ... gene-LOC132635782, gene-LOC132635834, gene-LOC132635843, gene-LOC132636645, gene-LOC132636830, gene-LOC132636831, gene-LOC132636834, gene-LOC132637392, gene-LOC132637398
Solanaceae	Solanum chilense	3	SOLCI004927300, SOLCI005823900, SOLCI006937100
Solanaceae	Solanum pennellii	4	gene-LOC107007675, gene-LOC107027903, gene-LOC107028118 ... gene-LOC107028124
Tamaricaceae	Reaumuria soongarica	1	STRG.4720_chr03_-
Tamaricaceae	Tamarix chinensis	1	TC01G2578
Zosteraceae	Zostera marina	4	Zosma04g09240.v3.1, Zosma05g13120.v3.1, Zosma05g13230.v3.1 ... Zosma05g13270.v3.1