Basic Information
Locus ID:
Ag7G00293
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentacotripeptide-repeat region of PRORP
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 8576630 | 8581805 | + | Ag7G00293 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 70,471.05 Da | 42.16 | 79.19 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 384 | 412 | 0.02 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 303 | 357 | 1.7E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 240 | 289 | 7.7E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 415 | 462 | 3.3E-13 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 87 | 146 | 2.6E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 171 | 219 | 1.0E-10 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 300 | 544 | 4.0E-47 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 184 | 295 | 1.4E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 43 | 183 | 1.1E-26 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 384 | 417 | 2.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 418 | 451 | 6.3E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 348 | 382 | 3.1E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 315 | 347 | 3.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 243 | 277 | 4.3E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 279 | 311 | 1.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 209 | 242 | 2.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 454 | 485 | 7.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 173 | 206 | 2.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 139 | 168 | 2.3E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 276 | 310 | 11.673842 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 416 | 450 | 12.167101 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 381 | 415 | 10.884628 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 135 | 169 | 11.454616 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 206 | 240 | 11.673842 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 311 | 345 | 9.393891 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 65 | 99 | 8.878711 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 170 | 205 | 9.415814 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 346 | 380 | 11.553267 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 451 | 485 | 10.380408 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 241 | 275 | 11.005202 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25630.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_017230210.1 | PREDICTED: pentatricopeptide repeat-containing protein At5g25630-like [Daucus carota subsp. sativus] | 0 |
| Q8GZ63 | Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2 | 0 | |
| TrEMBL | A0A166J685 | Pentatricopeptide repeat-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004497 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.706367 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.899016 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.507853 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.417968 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.511726 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.281904 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.058527 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.160316 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 45.758728 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 41.580128 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 45.45274 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 35.248642 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 34.27364 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 30.810682 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.166054 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.055412 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.123299 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.654663 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 26.163239 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.180017 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.626762 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.511023 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.646074 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.612852 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.863505 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 37.71241 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 30.266956 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 34.245705 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 34.194229 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 21.202126 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 32.418873 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 25.742199 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.626316 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.627259 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.157892 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.38492 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 13.598809 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.665207 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 44.577526 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 48.093269 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 50.53347 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.105443 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.241152 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.008495 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.385418 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.543541 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.933966 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.634985 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.011545 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.276373 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg3824, jg7860 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10714, gene_8166 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014544, Ah034904 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16657, Seu_jg19774 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007807 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30253400, pistato.v30256590 |
| Apiaceae | Apium graveolens | 2 | Ag10G01538, Ag7G00293 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G012070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710907 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G24253 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G21222.1, AT5G25630.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g21900.v2.2, Sp6g23340.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2119, Ceq06G1498 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl04G2313, Cgl04G2324, Cgl06G1553 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15860 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.1088, evm.TU.LG07.775 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003850 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G34995, Lb7G35002 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2290, BH07.3959, CH06.2313 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0248630.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_051474, gene-QYE76_051482 |
| Poaceae | Oryza coarctata | 2 | Oco01G005680, Oco02G005770 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G191200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204886, Pt_Chr0205057 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G014820, Chr21G007420, Chr31G007880 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G276300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG020600, gene_TRIDC3BG030970 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G153300.1, TraesCS3B02G179900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb315460_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29714 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g13310, gene.Posoc09g07670 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60417.2, evm.TU.60418.2 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25631 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14993 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4712 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1113 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001456 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14184, nbisL1-mrna-9731 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21067, nbisL1-mrna-996 |
| Salicaceae | Populus euphratica | 4 | populus_peu04868, populus_peu12782, populus_peu21928 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603462, gene-LOC132635663 |
| Solanaceae | Solanum chilense | 2 | SOLCI000411300, SOLCI005497300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026118, gene-LOC107028521 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32841_chr09_-, STRG.3917_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G0334, TC12G1292 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13580.v3.1 |