Basic Information
Locus ID:
Ag7G00269
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Appr-1'-p processing enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7750263 | 7757070 | - | Ag7G00269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 21,253.89 Da | 39.16 | 87.84 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02908 | Macro_OAADPr_deacetylase | 24 | 194 | 1.14068E-83 | - |
| Pfam | PF01661 | Macro domain | 45 | 161 | 1.3E-36 | IPR002589 |
| SUPERFAMILY | SSF52949 | Macro domain-like | 24 | 191 | 1.85E-52 | IPR043472 |
| Gene3D | G3DSA:3.40.220.10 | Leucine Aminopeptidase, subunit E, domain 1 | 10 | 198 | 1.4E-60 | IPR043472 |
| SMART | SM00506 | YBR022w_8 | 24 | 162 | 1.7E-47 | IPR002589 |
| ProSiteProfiles | PS51154 | Macro domain profile. | 12 | 197 | 27.014702 | IPR002589 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40600.1 | appr-1-p processing enzyme family protein. | 0 |
| RefSeq | XP_017255232.1 | PREDICTED: macro domain-containing protein VPA0103 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q8P5Z8 | Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=XCC3184 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6A4L226 | Macro domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_16538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 28.621128 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 29.611366 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 23.807877 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.642384 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 24.817547 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.573582 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.844639 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.2251 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 58.953247 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 58.323406 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 65.04464 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 58.975178 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 50.432621 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 52.139347 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 46.105968 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 35.640266 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 47.985302 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 38.819157 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 42.421421 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 29.866522 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 42.41869 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 53.018593 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 52.91597 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 43.977703 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 46.589268 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 52.529972 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 49.306709 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 51.340931 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 41.754868 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 63.638744 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 52.048218 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 61.469547 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 72.592728 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 41.104103 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 50.517525 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 94.23687 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 72.955574 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 97.142639 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.868149 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.859374 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.962847 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 36.183258 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 79.3479 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 169.33255 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 141.157089 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 44.262997 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 112.931381 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 40.777523 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 48.025021 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 52.282024 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg14196, jg14197, jg3108, jg6838 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17085 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032082 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g042690 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg30145, Sbi_jg32514, Sbi_jg43591 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18312 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004070 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66058, Sgl70374 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016050, gene:ENSEOMG00000017746 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0002740, CQ.Regalona.r1.2BG0003940 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30177770, pistato.v30251310 |
| Apiaceae | Apium graveolens | 1 | Ag7G00269 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G012700, COCNU_16G005750 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702127, gene-LOC103720404 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.548.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G03304 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G40600.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017560m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g22920.v2.2, Sp4g22930.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g004750.2N, BniB06g000210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0040 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0043 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g06660 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0622s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g11410, gene.Thate08g11420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011627 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02535, Lb1G02547 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3725, BH01.4076, CH01.4337 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0247420, gene-QOZ80_3BG0280820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0378540.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068080 |
| Poaceae | Oryza coarctata | 2 | Oco05G012980, Oco06G013490 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g21830.1, LOC_Os06g34540.1, LOC_Os08g04480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G362200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102644, Pt_Chr0102649 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G007810, Chr07G001150, Chr10G008810, Chr12G009840 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G308900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG018600, gene_TRIDC4BG030740 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G135800.1, TraesCS4B02G169200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb016110_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1656 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1252 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.61, evm.TU.LG17.55 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g12930 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.884 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-27457, nbisL1-mrna-27458 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1512 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.565 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001156 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14339 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19360 |
| Salicaceae | Populus euphratica | 1 | populus_peu16374 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640442 |
| Solanaceae | Solanum chilense | 1 | SOLCI005777100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020959 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13781 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0563 |
| Zosteraceae | Zostera marina | 1 | Zosma02g05260.v3.1 |