Basic Information
Locus ID:
Ag7G00217
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6042464 | 6053296 | - | Ag7G00217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.34 | 111,934.06 Da | 37.74 | 90.58 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05121 | ABC1_ADCK3-like | 136 | 390 | 2.77418E-88 | - |
| Pfam | PF00144 | Beta-lactamase | 530 | 798 | 2.3E-43 | IPR001466 |
| Pfam | PF03109 | ABC1 family | 155 | 260 | 1.2E-27 | IPR004147 |
| SUPERFAMILY | SSF56601 | beta-lactamase/transpeptidase-like | 515 | 799 | 2.59E-53 | IPR012338 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 138 | 362 | 1.25E-19 | IPR011009 |
| Gene3D | G3DSA:3.40.710.10 | - | 518 | 818 | 5.9E-78 | IPR012338 |
| Gene3D | G3DSA:3.40.710.10 | - | 874 | 977 | 1.5E-6 | IPR012338 |
| Coils | Coil | Coil | 426 | 446 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24810.1 | ABC1 family protein. | 0 |
| RefSeq | XP_017229032.1 | PREDICTED: uncharacterized protein LOC108204211 [Daucus carota subsp. sativus] | 0 |
| Q5ZMT7 | AarF domain-containing protein kinase 1 OS=Gallus gallus OX=9031 GN=ADCK1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166J846 | ABC1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 30.77585 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.276155 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 27.990122 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 26.264395 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 28.512043 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 24.958584 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 26.215355 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.110846 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.209654 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.195036 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.186661 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.778254 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.697134 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.590954 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.825916 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.96354 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.667418 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.958109 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.944385 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 35.107834 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 38.863468 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.297918 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.175686 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.420179 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.521252 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.37558 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.097602 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.062256 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.717128 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.005921 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.568981 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.728448 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 25.507673 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.791553 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 35.888798 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.347815 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.915333 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 15.94071 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.940169 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 21.020605 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 21.604919 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 71.531334 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 42.889622 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 29.351553 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 24.99065 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 62.054951 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.553473 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.764982 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.127796 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.818787 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36880 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8019 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034341 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g035090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20611, Sbi_jg23195 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16996 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009156 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53058, Sgl58333 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017592, gene:ENSEOMG00000019025 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013150, CQ.Regalona.r1.2BG0015080 |
| Anacardiaceae | Pistacia vera | 17 | pistato.v30082830, pistato.v30082850, pistato.v30082860 ... |
| Apiaceae | Apium graveolens | 1 | Ag7G00217 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G019490 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713116 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.615.V1.1, AsparagusV1_05.2351.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G31407, Ftri16G33640, Ftri7G24755, Ftri7G28562 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G24810.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003586m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g22640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g077540.2N, BniB04g003660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2140 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g09280 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g24210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-353 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1623 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00030344, Pov_00030890 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G12626, Lb2G12627, Lb2G12628, Lb2G12631 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2867, BH06.2665, CH06.2979 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0549860, gene-QOZ80_6BG0503430 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0431720.1, HORVU.MOREX.r3.7HG0727480.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_035762 |
| Poaceae | Oryza coarctata | 1 | Oco12G016720 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g48770.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G254100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401089, Pt_Chr0401092 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G021470, Chr11G001100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G703500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG058370, gene_TRIDC7BG051030 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G419200.1, TraesCS7B02G319800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb272880_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9629 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31086 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.184, evm.TU.LG15.58 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g20680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.990 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-13495, nbisL1-mrna-16620, nbisL1-mrna-16621 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10852, nbisL1-mrna-5482 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17183, nbisL1-mrna-9226 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.260, evm.TU.utg000025l.71 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004008, Maker00012195 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-23179, nbisL1-mrna-3682 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11068, nbisL1-mrna-7710 |
| Salicaceae | Populus euphratica | 3 | populus_peu04562, populus_peu04564, populus_peu13092 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635578 |
| Solanaceae | Solanum chilense | 1 | SOLCI004786700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028632 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13304 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1850 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19080.v3.1 |