Basic Information
Locus ID:
Ag7G00202
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 5620480 | 5623470 | + | Ag7G00202 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 31,212.29 Da | 45.34 | 81.45 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13837 | Myb/SANT-like DNA-binding domain | 16 | 81 | 1.6E-7 | IPR044822 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 16 | 84 | 7.99E-5 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 17 | 78 | 1.8E-8 | - |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 17 | 73 | 6.875948 | IPR001005 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31270.1 | sequence-specific DNA binding transcription factors. | 0 |
| RefSeq | XP_017237442.1 | PREDICTED: uncharacterized protein LOC108210595 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166J8M0 | Myb-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004562 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.949017 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.007465 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.558733 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.783044 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.083046 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.307943 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.465561 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.006773 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.709936 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.795458 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.595757 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.814236 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.480307 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.467567 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.574436 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.021423 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.543873 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.535285 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.836134 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.138323 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.262358 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.063133 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 19.235943 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.070904 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.717518 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.54566 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.313559 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.420153 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.059761 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.193213 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.523334 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.319626 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.387083 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.729425 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.971236 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.69073 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.69113 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.301017 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.190064 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.754463 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.975113 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 18.927784 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.233741 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 42.307301 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 40.245251 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.114536 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.131874 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.278051 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.651003 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.664946 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7771 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8016 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034277 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g035290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20594, Sbi_jg23167 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17011 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009175 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63461, Sgl67940, Sgl67960 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018624, gene:ENSEOMG00000019360 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013000, CQ.Regalona.r1.2BG0014890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30252340 |
| Apiaceae | Apium graveolens | 1 | Ag7G00202 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G007720, COCNU_11G009850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701445 |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_01.2741.V1.1, AsparagusV1_01.2742.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G14008 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G31270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025787m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g29130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g010570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2151 |
| Casuarinaceae | Casuarina glauca | 1 | CglSG0059 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08710 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g30140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1635 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028693 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.527, BH07.653, BH08.1553, CH07.531 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0103220, gene-QOZ80_2BG0156530 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0570820.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G003670, Oco04G003600 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g07800.1, LOC_Os03g49890.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G054600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202386, Pt_Chr0202395 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G034240, Chr15G025500 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G317700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG021690, gene_TRIDC6BG027390 |
| Poaceae | Triticum aestivum | 4 | TraesCS6A02G155000.1, TraesCS6B02G183000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb233350_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33632, nbis-gene-56664 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15031 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3501, evm.TU.LG16.81 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g20910 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1001 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13487 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10862 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9237 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.267 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004220 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3674 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7700 |
| Salicaceae | Populus euphratica | 2 | populus_peu04556, populus_peu13112 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635591 |
| Solanaceae | Solanum chilense | 1 | SOLCI007399600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027126 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1846 |