halophFGD

Basic Information

Locus ID: Ag7G00185

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: metal-nicotianamine transporter

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	5085299	5088962	-	Ag7G00185

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.29	36,499.24 Da	34.17	103.48	0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03169	OPT oligopeptide transporter protein	1	192	5.8E-33	IPR004813
Pfam	PF00069	Protein kinase domain	275	319	4.2E-9	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	275	321	9.84E-12	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	271	325	6.0E-11	-
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	292	304	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding) GO:0035673 (oligopeptide transmembrane transporter activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G65730.1	YELLOW STRIPE like 7. Arabidopsis thaliana metal-nicotianamine transporter YSL4
RefSeq	XP_017218085.1	PREDICTED: probable metal-nicotianamine transporter YSL7 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SHY2	Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana OX=3702 GN=YSL7 PE=2 SV=1
TrEMBL	A0A161WPT7	Metal-nicotianamine transporter YSL7 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023451 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.668737	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.386819	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.406168	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.680897	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.201861	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.377469	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.093949	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.844408	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.861736	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.714908	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.811771	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.569679	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.172306	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.226714	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.335374	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.559604	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.773549	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.685981	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.560377	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.776336	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.825666	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.028143	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.754983	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.85753	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.925532	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.311791	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.554448	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.600922	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.073788	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.149357		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.273378		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.470938		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.215932		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.936896		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.816797	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.631352	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.855331	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.163453	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.182083	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.837086	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.569251	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.511688	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.03961	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.004432	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.191921	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg13844, jg26015
Amaranthaceae	Suaeda glauca	1	Sgl63484
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005520, gene:ENSEOMG00000010196 ... gene:ENSEOMG00000024370, gene:ENSEOMG00000031906
Apiaceae	Apium graveolens	2	Ag4G02544, Ag7G00185
Arecaceae	Cocos nucifera	1	COCNU_10G010280
Brassicaceae	Brassica nigra	1	BniB08g055460.2N
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g21630
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG05.1687
Plantaginaceae	Plantago ovata	4	Pov_00002521, Pov_00010257, Pov_00019805, Pov_00019807
Plumbaginaceae	Limonium bicolor	1	Lb4G22795
Poaceae	Echinochloa crus-galli	2	AH07.2820, BH04.564
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.6HG0584800.1
Poaceae	Lolium multiflorum	1	gene-QYE76_015718
Poaceae	Oryza coarctata	2	Oco07G011050, Oco07G011940
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0306987, Pt_Chr0401085, Pt_Chr0704648
Poaceae	Sporobolus alterniflorus	3	Chr23G008410, Chr23G008420, Chr25G012580
Poaceae	Thinopyrum elongatum	5	Tel2E01G303300, Tel2E01G508600, Tel2E01G509400 ... Tel4E01G595100, Tel4E01G626100
Poaceae	Zea mays	3	Zm00001eb024050_P001, Zm00001eb158590_P001 ... Zm00001eb265480_P001
Poaceae	Zoysia japonica	3	nbis-gene-22426, nbis-gene-37120, nbis-gene-9312
Poaceae	Zoysia macrostachya	1	Zma_g14015
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-17104
Salicaceae	Populus euphratica	1	populus_peu24607
Solanaceae	Lycium barbarum	1	gene-LOC132643916
Tamaricaceae	Tamarix chinensis	1	TC08G1334