Basic Information
Locus ID:
Ag7G00179
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase cdc7
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 5028118 | 5040209 | + | Ag7G00179 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 121,227.92 Da | 52.40 | 76.64 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 821 | 1041 | 2.7E-31 | IPR000719 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 9 | 104 | 1.1E-28 | IPR000535 |
| SUPERFAMILY | SSF49354 | PapD-like | 5 | 135 | 8.37E-38 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 813 | 1050 | 1.21E-43 | IPR011009 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 4 | 131 | 1.9E-40 | IPR013783 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 902 | 1067 | 3.0E-24 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 772 | 895 | 3.8E-12 | - |
| SMART | SM00220 | serkin_6 | 819 | 1073 | 5.1E-17 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 819 | 1073 | 27.523857 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 8 | 128 | 29.137711 | IPR000535 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 931 | 943 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 286 | - | - |
| Coils | Coil | Coil | 153 | 187 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47180.1 | Plant VAMP (vesicle-associated membrane protein) family protein. | 0 |
| RefSeq | XP_017240244.1 | PREDICTED: uncharacterized protein LOC108213027 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9LVU1 | Vesicle-associated protein 2-1 OS=Arabidopsis thaliana OX=3702 GN=PVA21 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166J9P8 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004592 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.766718 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.179455 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.09705 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.17752 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.026011 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.623921 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.371607 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.266966 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.202828 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.520671 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.908898 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.106961 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.735821 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.874873 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.258899 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.258657 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.132031 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.818514 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.693075 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.736952 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.24297 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.976266 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.42465 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.249032 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.144647 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.093373 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.538576 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.522305 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.026778 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.013614 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.039053 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.522419 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.132604 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.544313 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4911 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2035 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004112 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105160 |
| Amaranthaceae | Salicornia bigelovii | 8 | Sbi_jg38973, Sbi_jg38974, Sbi_jg38980, Sbi_jg38983 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10844, Seu_jg11932 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010824 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51157, Sgl56461 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004661 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0004130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30141930 |
| Apiaceae | Apium graveolens | 1 | Ag7G00179 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G004860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710813 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3178.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G15921 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G16970.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024346m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g17210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g019340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0006 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0010, Cgl03G0016 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g04190 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g05240 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1129 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004126 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08589 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2882, BH01.3224, CH01.3452 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116910, gene-QOZ80_2BG0170630 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0057620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009958, gene-QYE76_012693 |
| Poaceae | Oryza coarctata | 2 | Oco19G010360, Oco20G010180 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G283300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503224, Pt_Chr0503269 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G005220, Chr13G019640, Chr15G018860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G368600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG032820, gene_TRIDC1BG038100 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G217400.1, TraesCS1B02G230600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb023800_P001, Zm00001eb391030_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12926 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.843, evm.TU.LG17.840 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g09540, gene.Posoc05g10880, gene.Posoc09g09320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.412 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17958 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-8315, nbisL1-mrna-8316 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.126 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018437 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16178 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10679 |
| Salicaceae | Populus euphratica | 2 | populus_peu03062, populus_peu33941 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635174 |
| Solanaceae | Solanum chilense | 1 | SOLCI006593700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026764 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14891 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2782 |
| Zosteraceae | Zostera marina | 1 | Zosma01g35870.v3.1 |