Basic Information
Locus ID:
Ag7G00170
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Angio-associated migratory cell
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 4924212 | 4934185 | + | Ag7G00170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.21 | 38,991.28 Da | 38.21 | 79.56 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 48 | 356 | 2.0239E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 169 | 0.0041 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 178 | 226 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 287 | 317 | 6.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 355 | 5.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 233 | 276 | 0.0061 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 48 | 84 | 0.047 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 95 | 127 | 8.8E-7 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 45 | 350 | 2.12E-63 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 283 | 363 | 2.3E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 198 | 281 | 1.2E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 45 | 197 | 5.6E-49 | IPR015943 |
| SMART | SM00320 | WD40_4 | 231 | 276 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 130 | 169 | 8.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 317 | 5.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 45 | 85 | 6.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 320 | 359 | 9.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 184 | 228 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 88 | 127 | 9.2E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 327 | 364 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 285 | 317 | 9.441055 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 95 | 130 | 13.922852 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 137 | 169 | 8.992876 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 196 | 237 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 285 | 326 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 238 | 285 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 52 | 86 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 95 | 136 | 17.325764 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 327 | 364 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 137 | 178 | 11.176815 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 263 | 277 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 114 | 128 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 156 | 170 | 6.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 304 | 318 | 6.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 114 | 128 | 6.7E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71840.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017230498.1 | PREDICTED: angio-associated migratory cell protein-like isoform X3 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A5J4ZXA5 | ANAPC4_WD40 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013105 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.44782 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.071503 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.474927 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.387914 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.104693 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.16754 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.218164 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 19.786085 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.203636 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.527832 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.772675 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 28.195604 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.165434 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.593063 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.756647 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 36.990318 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 26.94441 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 26.036613 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 31.172562 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 23.199213 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.187239 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 34.171108 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 42.278599 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 40.114418 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 41.711639 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 36.825695 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 41.391544 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 34.666721 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 44.659229 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.979125 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.365861 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.113223 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.022148 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.514547 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.487428 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.008574 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.406697 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.949975 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.882624 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.219522 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.523072 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.799592 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.028311 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 27.058014 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.535488 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.601363 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.235069 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.587515 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.091476 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.089441 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27415 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13286, gene_21422 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_5g115000, BVRB_6g133260, BVRB_9g219050 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13377, Sbi_jg52470 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9371 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013388 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71153, Sgl71718, Sgl74735, Sgl75289 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001851, gene:ENSEOMG00000005094 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2BG0002820, CQ.Regalona.r1.2BG0002830 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30037180, pistato.v30037340 |
| Apiaceae | Apium graveolens | 2 | Ag7G00170, Ag9G02767 |
| Arecaceae | Cocos nucifera | 1 | scaffold003116G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711604 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.196.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G07047 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G71840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018505m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g26870.v2.2, SpUn0020_0100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g040040.2N, BniB03g049660.2N, BniB05g069130.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1527, Ceq03G1529 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1663, Cgl03G1664 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01230 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.1815s00001.v1.0, Dusal.2803s00002.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g06910, gene.Thate01g09720 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007051, Pov_00030628 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G38178, Lb2G14336, Lb3G20589 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2297, BH08.2437, CH09.2433 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0108500, gene-QOZ80_6BG0463510 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0116380.1, HORVU.MOREX.r3.3HG0230460.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_007844, gene-QYE76_034974, gene-QYE76_067822 |
| Poaceae | Oryza coarctata | 3 | Oco05G020450, Oco06G021210, Oco16G012050 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g48090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G130100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204816, Pt_Chr0305097, Pt_Chr0604863 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G024010, Chr06G008860, Chr08G017490, Chr15G010410 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G582900, Tel2E01G264500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG052710, gene_TRIDC1BG060340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G358200.1, TraesCS1B02G374800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb139680_P001, Zm00001eb362180_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-28048, nbis-gene-42254 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12025, Zma_g28009 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.340, evm.TU.LG15.608 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.452 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9802 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2261 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18040 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.705 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003159 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9580 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18708 |
| Salicaceae | Populus euphratica | 3 | populus_peu16674, populus_peu16680, populus_peu18837 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132603144, gene-LOC132603240, gene-LOC132603241 |
| Solanaceae | Solanum chilense | 1 | SOLCI003135100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024210 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14874 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1221 |
| Zosteraceae | Zostera marina | 1 | Zosma04g00080.v3.1 |