Basic Information
Locus ID:
Ag7G00165
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin carboxyl-terminal hydrolase isozyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 4814965 | 4818282 | + | Ag7G00165 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 25,378.47 Da | 38.95 | 90.43 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09616 | Peptidase_C12_UCH_L1_L3 | 11 | 225 | 6.00756E-112 | - |
| Pfam | PF01088 | Ubiquitin carboxyl-terminal hydrolase, family 1 | 11 | 212 | 2.9E-57 | IPR001578 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 9 | 228 | 3.92E-74 | IPR038765 |
| Gene3D | G3DSA:3.40.532.10 | - | 5 | 229 | 8.4E-78 | IPR036959 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 179 | 189 | 1.6E-28 | IPR001578 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 163 | 174 | 1.6E-28 | IPR001578 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 13 | 30 | 1.6E-28 | IPR001578 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 51 | 63 | 1.6E-28 | IPR001578 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 91 | 108 | 1.6E-28 | IPR001578 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17510.1 | ubiquitin C-terminal hydrolase 3. | 0 |
| RefSeq | XP_017222046.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Daucus carota subsp. sativus] | 0 |
| Q8GWE1 | Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana OX=3702 GN=UCH3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166JA44 | Ubiquitin carboxyl-terminal hydrolase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004606 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.529329 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.175481 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.85344 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.722775 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.400689 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.447153 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.726843 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.58515 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.090069 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.57993 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.580275 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.41145 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.1061 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.333469 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.581262 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.635913 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.02678 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.970747 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.348 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.164929 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.245034 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.548923 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.143996 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.429162 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.737239 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37324 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2014 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004084 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24231, Sbi_jg8061 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11964 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010800 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl52436, Sgl57731, Sgl57794 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006078, gene:ENSEOMG00000022065 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004060, CQ.Regalona.r1.5BG0004390 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142140 |
| Apiaceae | Apium graveolens | 2 | Ag7G00165, Ag9G02770 |
| Arecaceae | Cocos nucifera | 2 | COCNU_10G003460, scaffold033853G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704666, gene-LOC103713588 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.3256.V1.1, AsparagusV1_04.3258.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G08269 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G17510.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026137m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g16650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g072620.2N, BniB05g018880.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0029, Ceq03G0030 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G0036, Cgl03G0037, Cgl03G0038 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g07870, gene.Cymno18g03040 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0171s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g09270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11334 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1146 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004139 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G08414, Lb4G21666, Lb6G30648, Lb7G33148 |
| Poaceae | Echinochloa crus-galli | 8 | AH07.2848, AH09.1794, AH09.2639, BH07.2664, BH09.1973 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0139520, gene-QOZ80_2BG0195170 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0185670.1, HORVU.MOREX.r3.2HG0208500.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_024108, gene-QYE76_024151, gene-QYE76_045338 ... |
| Poaceae | Oryza coarctata | 4 | Oco04G017760, Oco07G012190, Oco07G018630, Oco08G011910 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g43760.1, LOC_Os04g46190.1, LOC_Os04g57190.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G216400, gene-BS78_06G178400 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0203964, Pt_Chr0203986, Pt_Chr0300347, Pt_Chr0300382 ... |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G006030, Chr09G024510, Chr13G005920, Chr15G007670 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G674600, Tel2E01G917000, Tel6E01G458600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG056780, gene_TRIDC2AG075180 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G393000.1, TraesCS2A02G538800.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb186330_P002, Zm00001eb249260_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-22396, nbis-gene-6130, nbis-gene-9294 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14034, Zma_g16790, Zma_g22175 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.876, evm.TU.LG17.872 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g17960, gene.Posoc07g06700 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.399, evm.TU.Scaffold_14_RagTag.402 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17963 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-2152, nbisL1-mrna-2724, nbisL1-mrna-4279 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-8328, nbisL1-mrna-8330 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.131 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018475 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16172 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10688 |
| Salicaceae | Populus euphratica | 1 | populus_peu33925 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635161, gene-LOC132640947 |
| Solanaceae | Solanum chilense | 1 | SOLCI005703500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023722, gene-LOC107026796 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15929 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1335 |
| Zosteraceae | Zostera marina | 2 | Zosma02g15270.v3.1, Zosma06g29470.v3.1 |