Basic Information
Locus ID:
Ag7G00156
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 4638462 | 4639456 | - | Ag7G00156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 8,928.46 Da | 12.98 | 100.98 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_008238942.1 | PREDICTED: uncharacterized protein LOC103337557 [Prunus mume] | 0 |
| TrEMBL | A0A166JAA1 | Reverse transcriptase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004614 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 41.88168 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 51.950466 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 76.053528 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 81.53611 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 58.485073 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 89.665298 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 53.721836 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 92.23175 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.156175 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.323781 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.954878 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.772453 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.264664 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.374858 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.634756 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.367566 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.712434 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.241941 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.107872 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.466387 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.257449 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.834374 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.128256 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.875791 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.359349 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.848918 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.931628 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.152287 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.257659 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.99819 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.186645 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.145108 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.370152 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.994802 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.099273 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.431568 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.890114 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.423339 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.735224 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.71936 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.042492 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.721751 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.817061 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.200243 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.183519 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.77646 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.961115 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.142054 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.498834 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.749902 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4776, jg7649 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14713 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004573 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g100040 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg7749 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12279 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001148 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000005384, gene:ENSEOMG00000024416 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0006930, CQ.Regalona.r1.5BG0007180 |
| Apiaceae | Apium graveolens | 1 | Ag7G00156 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G005990 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G18473 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G23493.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026690m.g.v1.0 |
| Brassicaceae | Brassica nigra | 2 | BniB03g021350.2N, BniB05g013800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0346 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0439 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1442 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005255 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G09357, Lb5G29404 |
| Poaceae | Echinochloa crus-galli | 1 | BH09.2184 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0306580, gene-QOZ80_4BG0337570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0186400.2 |
| Poaceae | Oryza coarctata | 2 | Oco07G013840, Oco08G013350 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G196100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307297 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G005930, Chr26G013670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G679600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG057320, gene_TRIDC2BG060190 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G396100.1, TraesCS2B02G414400.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5627 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21830 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.3332 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.150 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12202 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8558 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000022l.226 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014220 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16016 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10932 |
| Salicaceae | Populus euphratica | 1 | populus_peu02441 |
| Solanaceae | Solanum chilense | 1 | SOLCI006591700 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10802_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3367 |