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Basic Information
Locus ID: Ag7G00136
Species & Taxonomic ID: Apium graveolens & 4045
Genome Assembly: GCA_009905375.1
Description: Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
Chromosome Start End Strand ID
chr7 3929176 3941217 + Ag7G00136
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.89 89,541.23 Da 46.42 91.06 -0.17
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd17920 DEXHc_RecQ 2 196 2.46525E-92 -
CDD cd18794 SF2_C_RecQ 197 332 1.1481E-52 -
Pfam PF14493 Helix-turn-helix domain 648 744 2.8E-16 IPR029491
Pfam PF16124 RecQ zinc-binding 335 397 2.3E-9 IPR032284
Pfam PF00570 HRDC domain 542 607 7.4E-15 IPR002121
Pfam PF00271 Helicase conserved C-terminal domain 218 322 1.6E-21 IPR001650
Pfam PF09382 RQC domain 399 496 7.7E-22 IPR018982
Pfam PF00270 DEAD/DEAH box helicase 16 176 5.5E-20 IPR011545
SUPERFAMILY SSF46785 Winged helix DNA-binding domain 395 498 1.26E-23 IPR036390
SUPERFAMILY SSF47819 HRDC-like 540 611 1.09E-15 IPR010997
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 21 334 1.44E-54 IPR027417
Gene3D G3DSA:1.10.150.80 HRDC domain 540 610 2.7E-16 IPR044876
Gene3D G3DSA:3.40.50.300 - 197 398 4.4E-55 IPR027417
Gene3D G3DSA:1.10.10.10 - 399 520 3.4E-31 IPR036388
Gene3D G3DSA:3.40.50.300 - 1 195 6.0E-74 IPR027417
SMART SM00341 hrdc7 537 617 2.2E-5 IPR002121
SMART SM00487 ultradead3 10 201 4.6E-30 IPR014001
SMART SM00956 RQC_2 404 508 2.1E-19 IPR018982
SMART SM00490 helicmild6 242 323 6.8E-27 IPR001650
TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 3 455 6.8E-149 IPR004589
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 23.964119 IPR014001
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile. 217 369 19.108353 IPR001650
ProSiteProfiles PS50967 HRDC domain profile. 537 617 17.583952 IPR002121
Gene Ontology
Biological Process:
GO:0006260 (DNA replication) GO:0006281 (DNA repair) GO:0006310 (DNA recombination) GO:0008152 (metabolic process)
Molecular Function:
GO:0000166 (nucleotide binding) GO:0003676 (nucleic acid binding) GO:0004386 (helicase activity) GO:0005524 (ATP binding) GO:0043138 (3'-5' DNA helicase activity)
KEGG Pathway
KO Term:
K03654 (ATP-dependent DNA helicase RecQ [EC:5.6.2.4])
Pathway:
ko03018 (RNA degradation) map03018 (RNA degradation)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G31360.4 - 0
RefSeq XP_028121142.1 uncharacterized protein LOC114318451 isoform X1 [Camellia sinensis] 0
Swiss-Prot P71359 ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 0
TrEMBL A0A5B7A5X2 ATP-dependent DNA helicase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_021611 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
PRJNA723697SRX1069225244.593971Shengqin NO.2seedS1-1S1-1initial formation stage (S1)
PRJNA723697SRX1069225415.269659Shengqin NO.2seedS1-3S1-3initial formation stage (S1)
PRJNA723697SRX1069225515.536059Shengqin NO.2seedS3-1S3-1middle development stage (S3)
PRJNA723697SRX1069225613.753577Shengqin NO.2seedS3-2S3-2middle development stage (S3)
PRJNA723697SRX1069225713.386107Shengqin NO.2seedS3-3S3-3middle development stage (S3)
PRJNA723697SRX1069225811.878559Shengqin NO.2seedS5-1S5-1maturation stage (S5)
PRJNA723697SRX1069225922.501617Shengqin NO.2seedS5-2S5-2maturation stage (S5)
PRJNA723697SRX1069226020.590517Shengqin NO.2seedS5-3S5-3maturation stage (S5)
PRJNA884666SRX1772927210.535379celeryantherW99A-r1male sterile line 
PRJNA884666SRX1772927310.952142celeryantherW99A-r2male sterile line 
PRJNA884666SRX1772927413.189745celeryantherW99A-r3male sterile line 
PRJNA884666SRX1772927511.587656celeryantherW99B-r1maintainer line
PRJNA884666SRX177292769.939817celeryantherW99B-r2maintainer line
PRJNA884666SRX177292777.595403celeryantherW99B-r3maintainer line
PRJNA884180SRX177438892.571606var. secalinum YablochnycollenchymaCol_S1_rep1-1
PRJNA884180SRX177480561.060637var. secalinum YablochnycollenchymaCol_S1_rep3biological replicate 3
PRJNA884180SRX177480573.227658var. secalinum YablochnycollenchymaCol_S1_rep4biological replicate 4
PRJNA884180SRX1774867810.235584var. secalinum YablochnyparenchymaPar_S1_rep1Biological replicate 1
PRJNA884180SRX177486791.588466var. secalinum YablochnyparenchymaPar_S1_rep2Biological replicate 2
PRJNA884180SRX177486801.163412var. secalinum YablochnyparenchymaPar_S1_rep3Biological replicate 3
PRJNA884180SRX177486812.239238var. secalinum YablochnyparenchymaPar_S1_rep4Biological replicate 4
PRJNA884180SRX177488985.869895var. secalinum Yablochnyvascular bundleVas_S1_rep1Biological replicate 1
PRJNA884180SRX1774889910.145826var. secalinum Yablochnyvascular bundleVas_S1_rep2Biological replicate 2
PRJNA884180SRX177489005.766617var. secalinum Yablochnyvascular bundleVas_S1_rep3Biological replicate 3
PRJNA884180SRX177489013.496381var. secalinum Yablochnyvascular bundleVas_S1_rep4Biological replicate 4
PRJNA884180SRX1774912931.58453var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep1Biological replicate 1
PRJNA884180SRX1774913011.701432var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep2Biological replicate 2
PRJNA884180SRX177491312.224211var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep3Biological replicate 3
PRJNA884180SRX1774913210.849224var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep4Biological replicate 4
PRJNA1124269SRX249364110.938804leafCK1replicate=biological replicate1
PRJNA1124269SRX249364120.063138leafCK2replicate=biological replicate2
PRJNA1124269SRX249364130.12931leafCK3replicate=biological replicate3
PRJNA1124269SRX249364140leafD1replicate=biological replicate1
PRJNA1124269SRX249364151.712335leafD2replicate=biological replicate2
PRJNA1124269SRX249364160.021898leafD3replicate=biological replicate3
PRJNA1124269SRX249364170.196064leafMD1replicate=biological replicate1
PRJNA1124269SRX249364181.159724leafMD2replicate=biological replicate2
PRJNA1124269SRX249364190.424313leafMD3replicate=biological replicate3
PRJNA387092SRX28333093.847599shanghaihuangxinleafleaves between 0.5 and 1 cm in breadth, folded;stage 2
PRJNA387092SRX28333210.702365shanghaihuangxinleafleaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sionstage 5
PRJNA387092SRX28333230.816959shanghaihuangxinleafleaves >3 cm, unfolded, with clearstem extensionstage 7
PRJNA543957SRX58795989.028901Zhangzhou lvqingstemSe3100 ppm Na2SeO4
PRJNA543957SRX58795991.066663Zhangzhou lvqingstemSe2100 ppm Na2SeO4
PRJNA543957SRX587960016.246582Zhangzhou lvqingstemMock2mock
PRJNA543957SRX587960156.009872Zhangzhou lvqingstemMock1mock
PRJNA543957SRX58796027.799271Zhangzhou lvqingstemSe1100 ppm Na2SeO4
PRJNA543957SRX58796032.003714Zhangzhou lvqingstemMock3mock
PRJNA609149SRX781591710.917325Jinnan Shiqinflower budearly flower budearly flower bud
PRJNA609149SRX781591813.195496Jinnan Shiqinflower budmiddle flower budmiddle flower bud
PRJNA609149SRX781591913.336627Jinnan Shiqinflower budearly flowering periodearly flowering period
Network
🔍 Co-expression Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 8 jg28255, jg28388, jg3112, jg32942, jg35691, jg36492, jg36904 ...
jg511
Aizoaceae Mesembryanthemum crystallinum 5 gene_10373, gene_10948, gene_21402, gene_2204, gene_5986
Amaranthaceae Atriplex hortensis 6 Ah004683, Ah005652, Ah007645, Ah007650, Ah015102, Ah026211
Amaranthaceae Beta vulgaris 4 BVRB_4g076650, BVRB_4g085250, BVRB_5g108290, BVRB_9g219470
Amaranthaceae Salicornia bigelovii 17 Sbi_jg11581, Sbi_jg11582, Sbi_jg11583, Sbi_jg11584 ...
Sbi_jg17232, Sbi_jg19109, Sbi_jg19110, Sbi_jg24320, Sbi_jg24683, Sbi_jg24684, Sbi_jg37535, Sbi_jg41810, Sbi_jg46522, Sbi_jg61848, Sbi_jg61849, Sbi_jg8151, Sbi_jg8541
Amaranthaceae Salicornia europaea 5 Seu_jg11870, Seu_jg20055, Seu_jg20834, Seu_jg491, Seu_jg5377
Amaranthaceae Suaeda aralocaspica 5 GOSA_00001730, GOSA_00005158, GOSA_00005159, GOSA_00015416 ...
GOSA_00022721
Amaranthaceae Suaeda glauca 15 Sgl21220, Sgl21221, Sgl24395, Sgl26558, Sgl26559, Sgl26564 ...
Sgl26565, Sgl26566, Sgl29570, Sgl42783, Sgl47537, Sgl52510, Sgl56386, Sgl57760, Sgl61917
Amaranthaceae Chenopodium album 15 gene:ENSEOMG00000007815, gene:ENSEOMG00000009554 ...
gene:ENSEOMG00000011352, gene:ENSEOMG00000012114, gene:ENSEOMG00000015846, gene:ENSEOMG00000022572, gene:ENSEOMG00000023795, gene:ENSEOMG00000024703, gene:ENSEOMG00000027272, gene:ENSEOMG00000035632, gene:ENSEOMG00000038441, gene:ENSEOMG00000042429, gene:ENSEOMG00000043166, gene:ENSEOMG00000044456, gene:ENSEOMG00000052042
Amaranthaceae Chenopodium quinoa 9 CQ.Regalona.r1.4AG0007300, CQ.Regalona.r1.4BG0007530 ...
CQ.Regalona.r1.4BG0018000, CQ.Regalona.r1.5AG0000910, CQ.Regalona.r1.5BG0010520, CQ.Regalona.r1.7BG0009780, CQ.Regalona.r1.8AG0016250, CQ.Regalona.r1.8BG0017330, CQ.Regalona.r1.9AG0014850
Anacardiaceae Pistacia vera 9 pistato.v30020930, pistato.v30082040, pistato.v30082220 ...
pistato.v30082310, pistato.v30082330, pistato.v30101500, pistato.v30101510, pistato.v30131840, pistato.v30211750
Apiaceae Apium graveolens 6 Ag6G01868, Ag6G02028, Ag7G00134, Ag7G00136, Ag7G00222 ...
Ag8G00366
Arecaceae Cocos nucifera 5 COCNU_01G001480, COCNU_03G004660, COCNU_07G015560 ...
COCNU_15G002740, scaffold023055G000040
Arecaceae Phoenix dactylifera 6 gene-LOC103697005, gene-LOC103701408, gene-LOC103702179 ...
gene-LOC103709371, gene-LOC103716081, gene-LOC120108368
Asparagaceae Asparagus officinalis 8 AsparagusV1_02.2169.V1.1, AsparagusV1_04.1057.V1.1 ...
AsparagusV1_05.2249.V1.1, AsparagusV1_07.771.V1.1, AsparagusV1_08.2684.V1.1, AsparagusV1_08.2685.V1.1, AsparagusV1_08.2792.V1.1, AsparagusV1_09.722.V1.1
Asteraceae Flaveria trinervia 6 Ftri12G31397, Ftri14G02097, Ftri14G26220, Ftri15G18536 ...
Ftri3G15988, Ftri4G04924
Brassicaceae Arabidopsis thaliana 5 AT1G10930.1, AT1G31360.1, AT1G60930.1, AT3G05740.1 ...
AT4G35740.1
Brassicaceae Eutrema salsugineum 5 Thhalv10006602m.g.v1.0, Thhalv10006954m.g.v1.0 ...
Thhalv10020334m.g.v1.0, Thhalv10023226m.g.v1.0, Thhalv10024545m.g.v1.0
Brassicaceae Schrenkiella parvula 5 Sp1g09640.v2.2, Sp1g27200.v2.2, Sp2g03660.v2.2 ...
Sp3g04620.v2.2, Sp7g33500.v2.2
Brassicaceae Brassica nigra 6 BniB01g057930.2N, BniB02g005920.2N, BniB03g004180.2N ...
BniB03g013340.2N, BniB04g020590.2N, BniB07g019200.2N
Casuarinaceae Casuarina equisetifolia 4 Ceq03G0024, Ceq06G1127, Ceq09G0389, Ceq09G0399
Casuarinaceae Casuarina glauca 5 Cgl03G0030, Cgl06G0692, Cgl06G0793, Cgl06G1174, Cgl09G0429
Cymodoceaceae Cymodocea nodosa 6 gene.Cymno04g13480, gene.Cymno05g13160, gene.Cymno07g01730 ...
gene.Cymno08g03930, gene.Cymno09g01390, gene.Cymno18g04950
Dunaliellaceae Dunaliella salina 7 Dusal.0020s00027.v1.0, Dusal.0020s00028.v1.0 ...
Dusal.0020s00029.v1.0, Dusal.0117s00007.v1.0, Dusal.0209s00011.v1.0, Dusal.0312s00009.v1.0, Dusal.0312s00010.v1.0
Hydrocharitaceae Thalassia testudinum 5 gene.Thate01g30250, gene.Thate02g06120, gene.Thate06g06100 ...
gene.Thate06g09850, gene.Thate09g19510
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-8263
Nitrariaceae Nitraria sibirica 5 evm.TU.LG01.509, evm.TU.LG02.2837, evm.TU.LG03.2526 ...
evm.TU.LG05.926, evm.TU.LG08.757
Plantaginaceae Plantago ovata 5 Pov_00001994, Pov_00003378, Pov_00003709, Pov_00036705 ...
Pov_00039241
Plumbaginaceae Limonium bicolor 7 Lb1G08105, Lb1G08107, Lb2G14222, Lb5G26915, Lb5G29560 ...
Lb5G29606, Lb8G35696
Poaceae Echinochloa crus-galli 13 AH03.4079, AH04.2158, AH07.331, AH07.3692, BH03.1658 ...
BH04.2336, BH04.2341, BH07.3505, BH07.433, CH03.1812, CH03.4491, CH04.2578, CH07.3580
Poaceae Eleusine coracana subsp. coracana 10 gene-QOZ80_2AG0101190, gene-QOZ80_2AG0148060 ...
gene-QOZ80_2BG0154570, gene-QOZ80_2BG0203460, gene-QOZ80_2BG0203470, gene-QOZ80_7BG0613160, gene-QOZ80_9AG0671310, gene-QOZ80_9AG0692270, gene-QOZ80_9BG0694780, gene-QOZ80_9BG0718310
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.2HG0111650.1, HORVU.MOREX.r3.2HG0169030.1 ...
HORVU.MOREX.r3.4HG0354110.1, HORVU.MOREX.r3.4HG0362480.1, HORVU.MOREX.r3.6HG0620770.1
Poaceae Lolium multiflorum 6 gene-QYE76_016504, gene-QYE76_025762, gene-QYE76_025763 ...
gene-QYE76_044072, gene-QYE76_065337, gene-QYE76_065610
Poaceae Oryza coarctata 9 Oco03G023420, Oco04G024000, Oco07G006170, Oco08G006110 ...
Oco13G016010, Oco14G016830, Oco21G009650, Oco22G010950, Oco22G011660
Poaceae Paspalum vaginatum 6 gene-BS78_01G266600, gene-BS78_02G392600, gene-BS78_K262600 ...
gene-BS78_04G033600, gene-BS78_04G296900, gene-BS78_05G256200
Poaceae Puccinellia tenuiflora 10 Pt_Chr0103464, Pt_Chr0103556, Pt_Chr0203032, Pt_Chr0206934 ...
Pt_Chr0302632, Pt_Chr0302666, Pt_Chr0305440, Pt_Chr0305467, Pt_Chr0604974, Pt_Chr0604976
Poaceae Sporobolus alterniflorus 12 Chr07G013990, Chr0G002400, Chr0G003660, Chr0G012030 ...
Chr0G029140, Chr0G032350, Chr23G019700, Chr24G012260, Chr26G000220, Chr26G000230, Chr26G000240, Chr31G008460
Poaceae Thinopyrum elongatum 5 Tel2E01G226200, Tel2E01G537900, Tel4E01G215000 ...
Tel4E01G228200, Tel6E01G603000
Poaceae Triticum dicoccoides 10 gene_TRIDC2AG012300, gene_TRIDC2AG044270 ...
gene_TRIDC2BG015080, gene_TRIDC2BG046980, gene_TRIDC4AG027310, gene_TRIDC4AG028650, gene_TRIDC4BG019850, gene_TRIDC4BG021710, gene_TRIDC6AG050960, gene_TRIDC6BG059650
Poaceae Triticum aestivum 15 TraesCS2A02G103300.1, TraesCS2A02G304900.1 ...
TraesCS2B02G120600.1, TraesCS2B02G321700.1, TraesCS2D02G102800.1, TraesCS2D02G303500.1, TraesCS4A02G170100.1, TraesCS4A02G178600.5, TraesCS4B02G126600.1, TraesCS4B02G138800.1, TraesCS4D02G133500.1, TraesCS4D02G144400.2, TraesCS6A02G339900.1, TraesCS6B02G371000.2, TraesCS6D02G320500.1
Poaceae Zea mays 7 Zm00001eb026880_P004, Zm00001eb165270_P001 ...
Zm00001eb231860_P001, Zm00001eb239640_P001, Zm00001eb257010_P001, Zm00001eb330800_P002, Zm00001eb431670_P001
Poaceae Zoysia japonica 6 nbis-gene-33262, nbis-gene-33765, nbis-gene-45943 ...
nbis-gene-45945, nbis-gene-45999, nbis-gene-8520
Poaceae Zoysia macrostachya 6 Zma_g12171, Zma_g14558, Zma_g14559, Zma_g19176, Zma_g24573 ...
Zma_g7958
Portulacaceae Portulaca oleracea 12 evm.TU.LG01.469, evm.TU.LG02.2474, evm.TU.LG02.2475 ...
evm.TU.LG04.291, evm.TU.LG06.1256, evm.TU.LG08.742, evm.TU.LG10.556, evm.TU.LG11.604, evm.TU.LG17.567, evm.TU.LG22.1186, evm.TU.LG23.694, evm.TU.LG23.695
Posidoniaceae Posidonia oceanica 6 gene.Posoc01g28100, gene.Posoc01g30810, gene.Posoc05g11510 ...
gene.Posoc05g19370, gene.Posoc07g02060, gene.Posoc08g03910
Rhizophoraceae Bruguiera sexangula 4 evm.TU.Scaffold_14_RagTag.743, evm.TU.Scaffold_1_RagTag.73 ...
evm.TU.Scaffold_1_RagTag.787, evm.TU.Scaffold_6_RagTag.2163
Rhizophoraceae Carallia pectinifolia 4 nbisL1-mrna-16970, nbisL1-mrna-17701, nbisL1-mrna-7310 ...
nbisL1-mrna-8202
Rhizophoraceae Ceriops tagal 4 nbisL1-mrna-12996, nbisL1-mrna-13389, nbisL1-mrna-17648 ...
nbisL1-mrna-5172
Rhizophoraceae Ceriops zippeliana 5 nbisL1-mrna-11667, nbisL1-mrna-11668, nbisL1-mrna-17086 ...
nbisL1-mrna-5159, nbisL1-mrna-5799
Rhizophoraceae Kandelia candel 4 evm.TU.utg000007l.8, evm.TU.utg000011l.1329 ...
evm.TU.utg000012l.50, evm.TU.utg000012l.504
Rhizophoraceae Kandelia obovata 4 Maker00007012, Maker00011357, Maker00011494, Maker00015978
Rhizophoraceae Rhizophora apiculata 5 nbisL1-mrna-15706, nbisL1-mrna-15707, nbisL1-mrna-15843 ...
nbisL1-mrna-7908, nbisL1-mrna-8301
Rhizophoraceae Rhizophora mangle 5 nbisL1-mrna-2951, nbisL1-mrna-67, nbisL1-mrna-897 ...
nbisL1-mrna-9019, nbisL1-mrna-9020
Salicaceae Populus euphratica 7 populus_peu13308, populus_peu14072, populus_peu17048 ...
populus_peu17049, populus_peu33352, populus_peu33356, populus_peu34153
Solanaceae Lycium barbarum 7 gene-LOC132598421, gene-LOC132598678, gene-LOC132614398 ...
gene-LOC132616885, gene-LOC132635550, gene-LOC132635553, gene-LOC132644378
Solanaceae Solanum chilense 5 SOLCI000829600, SOLCI001635100, SOLCI002212700 ...
SOLCI002906700, SOLCI003190000
Solanaceae Solanum pennellii 5 gene-LOC107012022, gene-LOC107020301, gene-LOC107024232 ...
gene-LOC107029016, gene-LOC107031384
Tamaricaceae Reaumuria soongarica 6 STRG.14383_chr08_-, gene_10751, gene_16133, gene_3038 ...
gene_6451, gene_8163
Tamaricaceae Tamarix chinensis 7 TC01G1360, TC01G1361, TC09G0552, TC10G1035, TC10G1036 ...
TC11G2030, TC11G2416
Zosteraceae Zostera marina 6 Zosma01g27830.v3.1, Zosma01g28950.v3.1, Zosma03g06920.v3.1 ...
Zosma05g02290.v3.1, Zosma05g16550.v3.1, Zosma05g22360.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.