Basic Information
Locus ID:
Ag7G00132
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Eukaryotic translation initiation factor 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 3877670 | 3884394 | - | Ag7G00132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 30,310.09 Da | 46.46 | 75.63 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01873 | Domain found in IF2B/IF5 | 137 | 246 | 8.7E-40 | IPR002735 |
| SUPERFAMILY | SSF100966 | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 113 | 220 | 1.23E-32 | IPR016189 |
| SUPERFAMILY | SSF75689 | Zinc-binding domain of translation initiation factor 2 beta | 217 | 252 | 1.18E-10 | IPR016190 |
| Gene3D | G3DSA:3.30.30.170 | - | 111 | 253 | 2.3E-54 | - |
| SMART | SM00653 | eIF2Bneu4 | 138 | 247 | 2.9E-68 | IPR002735 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20920.1 | eukaryotic translation initiation factor 2 beta subunit. protein synthesis initiation factor eIF2 beta | 0 |
| RefSeq | XP_017230731.1 | PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Daucus carota subsp. sativus] | 0 |
| O24473 | Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum OX=4565 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A0YMU6 | Eukaryotic translation initiation factor (Fragment) OS=Panax notoginseng OX=44586 GN=ETIF PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 69.240189 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 38.869846 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 48.763645 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 49.382774 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 47.324638 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 50.157932 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 46.937878 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 33.924446 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 83.473709 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 88.094727 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 87.409668 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 107.985786 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 98.694168 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 88.127533 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 79.124168 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 91.319328 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 108.459633 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 83.967102 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 71.841576 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 86.081207 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 83.829865 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 142.630524 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 143.111313 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 134.920303 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 126.404053 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 92.922661 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 97.587631 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 86.065002 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 100.151039 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 39.606598 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 52.689259 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 47.952751 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 71.623047 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 80.799057 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 70.583961 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 57.147591 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 58.752052 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 46.686199 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 40.773483 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 21.975437 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.956079 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 80.055176 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 123.013145 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 108.898354 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 156.266129 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 95.100136 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 130.61264 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 114.092209 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 119.701233 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 126.079086 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14687, jg35709 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16091, gene_17104 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah011512, Ah017538, Ah025298, Ah031565, Ah031566, Ah032159 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038680 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg2123, Sbi_jg30102, Sbi_jg34382, Sbi_jg40132 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1702, Seu_jg18349, Seu_jg2643 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004124, GOSA_00011313 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl46304, Sgl51020, Sgl66111, Sgl70427 |
| Amaranthaceae | Chenopodium album | 11 | gene:ENSEOMG00000003222, gene:ENSEOMG00000005402 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.2AG0003170, CQ.Regalona.r1.6AG0015320 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30095010, pistato.v30269370 |
| Apiaceae | Apium graveolens | 2 | Ag1G01171, Ag7G00132 |
| Arecaceae | Cocos nucifera | 2 | COCNU_16G005660, contig69425917G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706238, gene-LOC103722171 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.732.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G30945, Ftri9G10289 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G07920.1, AT5G01940.1, AT5G20920.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10014385m.g.v1.0, Thhalv10014626m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g03660.v2.2, Sp6g23600.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g042020.2N, BniB05g042650.2N, BniB08g046610.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq04G0687, Ceq05G0954, Ceq08G2457 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0787, Cgl08G2692 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g12290 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0119s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g30480, gene.Thate02g30500, gene.Thate04g21360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8740, nbisL1-mrna-8744 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG01.529, evm.TU.LG01.530, evm.TU.LG01.531 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007646, Pov_00036728 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G21416, Lb4G25700 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3741, AH03.4074, BH01.4090, BH03.4412, CH01.4354 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0247140, gene-QOZ80_3BG0281100 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0111800.1, HORVU.MOREX.r3.4HG0378950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038699 |
| Poaceae | Oryza coarctata | 4 | Oco05G012810, Oco06G013680, Oco13G015960, Oco14G016770 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g21550.1, LOC_Os07g48300.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G364000, gene-BS78_02G391900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102633, Pt_Chr0602298 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G034040, Chr04G010660, Chr07G001280, Chr0G002450 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G227300, Tel4E01G310100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG012400, gene_TRIDC2BG015180 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G104200.1, TraesCS2B02G121200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb015940_P001, Zm00001eb111600_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-1683, nbis-gene-33255, nbis-gene-3369 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g1265, Zma_g3689, Zma_g5795, Zma_g7086 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.203, evm.TU.LG10.76, evm.TU.LG15.761 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g06800, gene.Posoc04g06820 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.406 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24342 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19617 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19670 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.383, evm.TU.utg000027l.326 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015397, Maker00018159 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5659 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11891 |
| Salicaceae | Populus euphratica | 1 | populus_peu14527 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606643, gene-LOC132622035 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023729 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.9748_chr06_+, gene_5727 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2353, TC09G2470 |
| Zosteraceae | Zostera marina | 1 | Zosma03g02900.v3.1 |