Basic Information
Locus ID:
Ag6G02939
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 304956013 | 304970990 | + | Ag6G02939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 176,346.56 Da | 42.15 | 87.22 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 1215 | 1336 | 7.4E-17 | IPR040847 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 446 | 545 | 3.0E-10 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 677 | 762 | 7.1E-13 | IPR020683 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 839 | 957 | 1.3E-18 | IPR040847 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 1089 | 1207 | 1.1E-12 | IPR040847 |
| Pfam | PF00069 | Protein kinase domain | 119 | 398 | 3.4E-25 | IPR000719 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 1342 | 1463 | 1.7E-17 | IPR040847 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 963 | 1083 | 1.1E-13 | IPR040847 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 555 | 603 | 4.7E-7 | - |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 1471 | 1590 | 1.5E-14 | IPR040847 |
| Pfam | PF13445 | RING-type zinc-finger | 8 | 51 | 1.9E-6 | IPR027370 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 480 | 774 | 3.41E-42 | IPR036770 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 112 | 416 | 1.1E-43 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 61 | 2.87E-10 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 438 | 551 | 8.5E-21 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 198 | 415 | 2.0E-37 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 88 | 7.4E-16 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 552 | 695 | 2.6E-23 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 696 | 837 | 3.4E-25 | IPR036770 |
| SMART | SM00248 | ANK_2a | 731 | 760 | 0.04 | IPR002110 |
| SMART | SM00248 | ANK_2a | 585 | 614 | 380.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 698 | 727 | 5.8E-7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 517 | 546 | 0.04 | IPR002110 |
| SMART | SM00248 | ANK_2a | 483 | 513 | 0.001 | IPR002110 |
| SMART | SM00248 | ANK_2a | 659 | 693 | 760.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 620 | 651 | 940.0 | IPR002110 |
| SMART | SM00184 | ring_2 | 8 | 53 | 3.6E-6 | IPR001841 |
| SMART | SM00248 | ANK_2a | 552 | 581 | 0.035 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 698 | 729 | 13.548809 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 731 | 763 | 9.728291 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 517 | 544 | 8.534378 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 115 | 402 | 26.817158 | IPR000719 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 483 | 516 | 10.579329 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 483 | 505 | 9.675228 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 552 | 584 | 9.11028 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 517 | 549 | 9.217119 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 731 | 763 | 11.08682 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 698 | 730 | 14.53241 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 8 | 54 | 13.13841 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 27 | 36 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 484 | 499 | 5.2E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 680 | 694 | 5.2E-6 | IPR002110 |
| Coils | Coil | Coil | 75 | 95 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13530.1 | protein kinases;ubiquitin-protein ligases. Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling. KEG is essential for Arabidopsis growth and development. ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway. | 0 |
| RefSeq | XP_017226815.1 | PREDICTED: E3 ubiquitin-protein ligase KEG [Daucus carota subsp. sativus] | 0 |
| Q9FY48 | E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana OX=3702 GN=KEG PE=1 SV=2 | 0 | |
| TrEMBL | A0A166GRE1 | RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001913 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.050005 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.384458 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.190687 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.791338 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.146368 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.182345 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.65616 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.707285 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.688208 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.446781 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.94603 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.173195 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.70755 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.883171 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.608204 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.021532 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.394368 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.583658 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.392022 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.866736 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.441866 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.972818 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.908172 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.560938 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.731494 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.775299 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.254403 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.607535 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.618765 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.198466 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.962008 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.541579 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.910697 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.587969 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.59546 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.714632 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.143873 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.1395 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.622481 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.239696 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.331736 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.294437 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.726068 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.994759 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.994057 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.10661 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.898146 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.200835 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.545525 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.535405 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26620, jg29897 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24422 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032315 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30023, Sbi_jg43462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18441 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004204 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66219, Sgl70535 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014968, gene:ENSEOMG00000019608 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0004540, CQ.Regalona.r1.2BG0005360 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165730 |
| Apiaceae | Apium graveolens | 2 | Ag6G02939, Ag8G01163 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G017600, COCNU_16G001660 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702563, gene-LOC103716443 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1826.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G11643 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012422m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g006380.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0902, Ceq05G1607 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0914, Cgl05G1603 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g10300 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g01830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3156, nbisL1-mrna-7282 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2014, evm.TU.LG09.736 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039394 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02391, Lb7G35419 |
| Poaceae | Echinochloa crus-galli | 2 | AH05.2599, CH05.2772 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0374510, gene-QOZ80_5BG0421810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0064500.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_013688, gene-QYE76_071995 |
| Poaceae | Oryza coarctata | 2 | Oco09G008750, Oco10G008900 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g32570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G132900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505121 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G021240, Chr12G016680, Chr12G016690, Chr18G008360 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G405300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG036850, gene_TRIDC1BG041860 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G245000.3, TraesCS1B02G256200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287260_P002, Zm00001eb350870_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-12097, nbis-gene-14541, nbis-gene-14542 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28181 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1021, evm.TU.LG25.319 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g21000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.72 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28491 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1047 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14067, nbisL1-mrna-14068 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.289 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00019135 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14989 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21475 |
| Salicaceae | Populus euphratica | 3 | populus_peu01794, populus_peu04229, populus_peu04230 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645371 |
| Solanaceae | Solanum chilense | 1 | SOLCI006813100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002366 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13741_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3920 |
| Zosteraceae | Zostera marina | 1 | Zosma01g27350.v3.1 |