Basic Information
Locus ID:
Ag6G02921
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 304049892 | 304051689 | + | Ag6G02921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 13,865.60 Da | 80.13 | 56.16 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06747 | CHCH domain | 97 | 130 | 2.6E-7 | IPR010625 |
| SUPERFAMILY | SSF47072 | Cysteine alpha-hairpin motif | 95 | 130 | 4.71E-5 | IPR009069 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 30 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64400.1 | 0 | |
| RefSeq | XP_017232807.1 | PREDICTED: hemiasterlin resistant protein 1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161YNK6 | CHCH domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001853 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 497.814575 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 415.59198 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 548.981323 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 482.213959 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 432.199707 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 435.342285 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 325.875793 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 360.089783 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 427.054901 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 398.117218 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 342.79126 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 693.983643 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 543.715332 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 629.489014 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 338.773804 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 340.545074 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 384.841675 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 304.02124 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 315.798187 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 359.381958 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 370.921692 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 380.707031 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 380.428192 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 414.543213 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 363.747284 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 294.087158 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 309.390991 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 282.112 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 318.348785 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 578.39386 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 421.370911 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 451.767822 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 665.215393 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 966.263 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 659.00824 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 661.869019 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 629.903442 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 723.186157 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 244.770844 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 273.385925 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 331.118958 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 563.005554 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 366.434967 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 161.894943 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 180.465927 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 679.312439 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 226.281616 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 646.906372 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 620.849854 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 534.808716 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1228, jg26359, jg28532, jg30168 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_1123, gene_24150, gene_25904 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g134050 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12604, Sbi_jg53335 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8588 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010426 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33657, Sgl38969 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002676, gene:ENSEOMG00000003653 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0012840, CQ.Regalona.r1.6AG0023210 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30042140, pistato.v30102370, pistato.v30102380 ... |
| Apiaceae | Apium graveolens | 1 | Ag6G02921 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G012880 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710195, gene-LOC103712040 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.3558.V1.1, AsparagusV1_07.3559.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G04609, Ftri8G19403 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G09570.1, AT5G64400.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10005092m.g.v1.0, Thhalv10014959m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g27490.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g052190.2N, BniB05g066890.2N, BniB06g012610.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1053, Ceq09G0565 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1137, Cgl09G0591 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g07590, gene.Cymno11g03080 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0205s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate03g04830, gene.Thate03g11420, gene.Thate04g00050 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.567, evm.TU.LG06.243 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002166, Pov_00039733 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05784, Lb7G34539 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.1006, BH01.1148, CH01.1203, CH05.4543 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0221120, gene-QOZ80_3BG0266360 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0334800.1, HORVU.MOREX.r3.5HG0420340.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_000326, gene-QYE76_000328, gene-QYE76_000329 ... |
| Poaceae | Oryza coarctata | 3 | Oco05G020440, Oco06G021200, Oco24G011140 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g48080.1, LOC_Os12g44080.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G122400 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0104948, Pt_Chr0104955, Pt_Chr0704813, Pt_Chr0704892 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G008120, Chr04G026000, Chr07G020700, Chr12G013010 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G055900, Tel5E01G013100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG043980, gene_TRIDC4BG004800 |
| Poaceae | Triticum aestivum | 4 | TraesCS4B02G028800.1, TraesCS4D02G026400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb053320_P001, Zm00001eb053330_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14668, nbis-gene-15773 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3051 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1478, evm.TU.LG05.299, evm.TU.LG12.150 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc03g29020, gene.Posoc04g05910, gene.Posoc04g05930 ... |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.Scaffold_1_RagTag.1951, evm.TU.Scaffold_2_RagTag.484 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-9563, nbisL1-mrna-9685 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-14912, nbisL1-mrna-2042, nbisL1-mrna-527 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-18138, nbisL1-mrna-18224, nbisL1-mrna-9692 |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000018l.237, evm.TU.utg000009l.672 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00002854, Maker00003172, Maker00005263, Maker00017135 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-20572, nbisL1-mrna-2594, nbisL1-mrna-2947 ... |
| Rhizophoraceae | Rhizophora mangle | 5 | nbisL1-mrna-13896, nbisL1-mrna-16559, nbisL1-mrna-18613 ... |
| Salicaceae | Populus euphratica | 2 | populus_peu01699, populus_peu36118 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606436, gene-LOC132606437 |
| Solanaceae | Solanum chilense | 1 | SOLCI000828800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002754 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.8908_chr03_+, gene_16219 |
| Tamaricaceae | Tamarix chinensis | 2 | TC09G0234, TC11G0657 |
| Zosteraceae | Zostera marina | 1 | Zosma03g03260.v3.1 |