halophFGD

Basic Information

Locus ID: Ag6G02915

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Squalene monooxygenase-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	303904395	303908406	-	Ag6G02915

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.16	58,908.59 Da	42.20	99.10	0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13450	NAD(P)-binding Rossmann-like domain	68	94	1.5E-5	-
Pfam	PF08491	Squalene epoxidase	215	487	1.1E-118	IPR013698
SUPERFAMILY	SSF51905	FAD/NAD(P)-binding domain	65	438	5.59E-46	IPR036188
Gene3D	G3DSA:3.50.50.60	-	61	436	9.5E-32	IPR036188
PRINTS	PR00420	Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature	214	229	6.8E-9	-
PRINTS	PR00420	Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature	65	87	6.8E-9	-
PRINTS	PR00420	Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature	357	373	6.8E-9	-
PRINTS	PR00420	Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature	342	357	6.8E-9	-

Gene Ontology

Molecular Function:

GO:0004506 (squalene monooxygenase activity) GO:0050660 (flavin adenine dinucleotide binding)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K00511 (squalene monooxygenase [EC:1.14.14.17])

Pathway:

ko00100 (Steroid biosynthesis) map00100 (Steroid biosynthesis) ko00909 (Sesquiterpenoid and triterpenoid biosynthesis) map00909 (Sesquiterpenoid and triterpenoid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R02874 (Squalene + Oxygen + [Reduced NADPH---hemoprotein reductase] <=> (S)-2,3-Epoxysqualene + [Oxidized NADPH---hemoprotein reductase] + H2O)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein. Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.
RefSeq	XP_017219724.1	PREDICTED: squalene monooxygenase-like [Daucus carota subsp. sativus]
Swiss-Prot	B7TWW5	Squalene monooxygenase SE2 OS=Panax ginseng OX=4054 GN=SQE2 PE=2 SV=2
TrEMBL	A0A2L0V4L5	Squalene monooxygenase OS=Trachyspermum ammi OX=52570 GN=SQLE PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	23.578039	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	34.257607	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	38.59589	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	42.167694	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	38.587223	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	28.530252	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	31.26091	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.276201	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	41.442764	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	42.101074	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	47.053131	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	63.349121	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	73.647011	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	72.044731	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	61.418697	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	62.660175	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	57.136734	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	52.390694	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	54.256062	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	43.033257	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	34.043602	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	40.260662	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	58.05917	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	42.943409	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	39.487541	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	50.529202	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	65.861626	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	28.827686	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	49.969955	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	16.549984		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	20.697216		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	17.160606		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	22.949396		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	20.227852		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	29.573664		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	12.164623		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.838272		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.851595		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	77.531708	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	41.08297	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	19.638723	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.742094	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	15.297533	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.93334	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	9.328045	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.447512	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	8.323625	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	50.924599	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	32.843189	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	36.881351	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg19618, jg22685, jg26313, jg28874, jg30178, jg30181 ... jg39906
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24024, gene_8566
Amaranthaceae	Atriplex hortensis	2	Ah027502, Ah036603
Amaranthaceae	Beta vulgaris	2	BVRB_1g014580, BVRB_6g128510
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg39620, Sbi_jg52602, Sbi_jg54722
Amaranthaceae	Salicornia europaea	2	Seu_jg14725, Seu_jg9213
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00013239, GOSA_00013264
Amaranthaceae	Suaeda glauca	4	Sgl12582, Sgl17852, Sgl34552, Sgl39967
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000003226, gene:ENSEOMG00000016502 ... gene:ENSEOMG00000028137, gene:ENSEOMG00000036463
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0020720, CQ.Regalona.r1.1BG0008220 ... CQ.Regalona.r1.6AG0026590, CQ.Regalona.r1.6BG0028000
Anacardiaceae	Pistacia vera	6	pistato.v30042770, pistato.v30162400, pistato.v30162440 ... pistato.v30162450, pistato.v30162510, pistato.v30204720
Apiaceae	Apium graveolens	5	Ag1G00657, Ag1G01872, Ag3G00102, Ag6G02915, Ag8G01962
Arecaceae	Cocos nucifera	1	COCNU_06G019630
Arecaceae	Phoenix dactylifera	2	gene-LOC103707523, gene-LOC103713674
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2350.V1.1, AsparagusV1_03.754.V1.1
Asteraceae	Flaveria trinervia	6	Ftri18G31436, Ftri1G27905, Ftri3G11054, Ftri4G28981 ... Ftri6G23310, Ftri8G10115
Brassicaceae	Arabidopsis thaliana	3	AT1G58440.1, AT2G22830.1, AT4G37760.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000099m.g.v1.0, Thhalv10023406m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g05160.v2.2, Sp4g01850.v2.2, Sp7g35410.v2.2 ... SpUn0042_0010.v2.2
Brassicaceae	Brassica nigra	3	BniB01g020980.2N, BniB04g019450.2N, BniB05g001290.2N
Casuarinaceae	Casuarina equisetifolia	11	Ceq01G0349, Ceq01G0350, Ceq01G0351, Ceq01G0352, Ceq01G1259 ... Ceq01G1260, Ceq03G1250, Ceq06G0445, Ceq07G1884, Ceq07G1886, Ceq09G0504
Casuarinaceae	Casuarina glauca	10	Cgl01G0356, Cgl01G0357, Cgl01G0358, Cgl01G1405, Cgl03G1356 ... Cgl03G1469, Cgl06G0300, Cgl06G0462, Cgl07G2058, Cgl09G0544
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g14740
Dunaliellaceae	Dunaliella salina	1	Dusal.0277s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g31110, gene.Thate02g31130, gene.Thate06g13850
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10581, nbisL1-mrna-5631, nbisL1-mrna-8811
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2602, evm.TU.LG03.876, evm.TU.LG06.302
Plantaginaceae	Plantago ovata	4	Pov_00001659, Pov_00007821, Pov_00012042, Pov_00037100
Plumbaginaceae	Limonium bicolor	3	Lb2G08638, Lb3G21341, Lb7G32955
Poaceae	Echinochloa crus-galli	3	AH01.4447, CH01.5055, Contig192.86
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0239720, gene-QOZ80_3BG0288300
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0394640.1
Poaceae	Lolium multiflorum	1	gene-QYE76_069627
Poaceae	Oryza coarctata	4	Oco05G007250, Oco05G007260, Oco06G007500, Oco06G007510
Poaceae	Oryza sativa	2	LOC_Os03g12900.1, LOC_Os03g12910.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G429800
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0101875
Poaceae	Sporobolus alterniflorus	4	Chr01G028480, Chr04G000860, Chr07G001040, Chr12G010960
Poaceae	Thinopyrum elongatum	1	Tel4E01G406900
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG009260, gene_TRIDC4BG041600
Poaceae	Triticum aestivum	3	TraesCS4A02G059900.1, TraesCS4B02G235500.1 ... TraesCS4D02G236900.1
Poaceae	Zea mays	2	Zm00001eb009510_P002, Zm00001eb399370_P003
Poaceae	Zoysia japonica	1	nbis-gene-3992
Poaceae	Zoysia macrostachya	2	Zma_g1724, Zma_g4101
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.1609, evm.TU.LG03.591, evm.TU.LG12.1139 ... evm.TU.LG12.280
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g27500, gene.Posoc04g07220
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_7_RagTag.851, evm.TU.Scaffold_8_RagTag.881
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-19307, nbisL1-mrna-9350
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-14452, nbisL1-mrna-19413
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-20602, nbisL1-mrna-6681
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000002l.655, evm.TU.utg000018l.260
Rhizophoraceae	Kandelia obovata	2	Maker00002993, Maker00010735
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11464, nbisL1-mrna-13111
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10099, nbisL1-mrna-17098
Salicaceae	Populus euphratica	5	populus_peu21917, populus_peu23744, populus_peu29075 ... populus_peu32097, populus_peu37081
Solanaceae	Lycium barbarum	2	gene-LOC132621802, gene-LOC132627737
Solanaceae	Solanum chilense	1	SOLCI001794800
Solanaceae	Solanum pennellii	3	gene-LOC107011971, gene-LOC107011974, gene-LOC107017670
Tamaricaceae	Reaumuria soongarica	2	STRG.31139_chr11_+, gene_9275
Tamaricaceae	Tamarix chinensis	2	TC04G1977, TC04G2730
Zosteraceae	Zostera marina	1	Zosma06g01910.v3.1