halophFGD

Basic Information

Locus ID: Ag6G02905

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: leucine-rich repeat receptor-like protein kinase At5g49770

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	302797459	302804173	+	Ag6G02905

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.84	104,283.17 Da	34.83	92.56	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	636	902	2.96153E-96	-
Pfam	PF13855	Leucine rich repeat	285	345	2.5E-6	IPR001611
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	634	898	2.0E-45	IPR001245
Pfam	PF13855	Leucine rich repeat	111	170	5.9E-7	IPR001611
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	616	910	5.26E-75	IPR011009
SUPERFAMILY	SSF52058	L domain-like	33	383	1.31E-52	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	22	178	4.4E-40	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	179	279	5.2E-20	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	280	408	6.9E-19	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	706	920	6.5E-57	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	603	705	1.4E-34	-
SMART	SM00220	serkin_6	630	906	1.3E-30	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	630	903	37.389389	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	750	762	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	636	658	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G49760.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017229943.1	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Daucus carota subsp. sativus]
Swiss-Prot	Q8GZ99	Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1
TrEMBL	A0A166GQ80	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001875 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.536522	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	4.797167	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.701592	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	9.07176	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	9.216227	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	6.363728	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	4.215714	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.557874	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	48.275658	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	46.416725	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	49.07576	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	42.290295	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	42.22123	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	38.347321	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	43.035419	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	47.224167	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	26.542578	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	35.996796	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	40.275322	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	40.163704	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	42.123894	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	23.378393	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	18.832693	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.979968	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	18.431244	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	26.412336	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	19.333879	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	30.400845	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	26.341002	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	38.443775		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	51.127094		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	35.57119		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	40.453964		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	27.072123		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	40.219414		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	27.89324		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	15.668405		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	17.190527		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	56.489204	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	58.841553	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	60.425194	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	40.88446	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	47.862316	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	69.088737	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	63.60371	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	32.39209	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	69.192299	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	42.505692	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	33.725826	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	43.766949	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg1337, jg14643, jg14644, jg28321, jg28322, jg28323, jg28324 ... jg30030, jg34299, jg9844
Aizoaceae	Mesembryanthemum crystallinum	5	gene_17664, gene_17665, gene_24268, gene_24269, gene_9918
Amaranthaceae	Atriplex hortensis	6	Ah012409, Ah012424, Ah012426, Ah017227, Ah035247, Ah035250
Amaranthaceae	Beta vulgaris	9	BVRB_1g015390, BVRB_2g024380, BVRB_2g024390, BVRB_2g024420 ... BVRB_3g054870, BVRB_6g145440, BVRB_6g145450, BVRB_6g145460, BVRB_6g145490
Amaranthaceae	Salicornia bigelovii	17	Sbi_jg21359, Sbi_jg25770, Sbi_jg42204, Sbi_jg42205 ... Sbi_jg42445, Sbi_jg42446, Sbi_jg42447, Sbi_jg42450, Sbi_jg42452, Sbi_jg44758, Sbi_jg44759, Sbi_jg45058, Sbi_jg45059, Sbi_jg45060, Sbi_jg45061, Sbi_jg45062, Sbi_jg9593
Amaranthaceae	Salicornia europaea	10	Seu_jg16369, Seu_jg16370, Seu_jg19047, Seu_jg24237 ... Seu_jg27100, Seu_jg27101, Seu_jg27102, Seu_jg27103, Seu_jg27324, Seu_jg27325
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00002191, GOSA_00002192, GOSA_00002193, GOSA_00002251 ... GOSA_00002252, GOSA_00016404, GOSA_00029007
Amaranthaceae	Suaeda glauca	13	Sgl31769, Sgl31770, Sgl31827, Sgl31828, Sgl37055, Sgl37106 ... Sgl46014, Sgl46051, Sgl50706, Sgl62472, Sgl65325, Sgl67170, Sgl69713
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000000638, gene:ENSEOMG00000001556 ... gene:ENSEOMG00000002290, gene:ENSEOMG00000003576, gene:ENSEOMG00000012141, gene:ENSEOMG00000024278, gene:ENSEOMG00000025276, gene:ENSEOMG00000025864, gene:ENSEOMG00000028556, gene:ENSEOMG00000032550, gene:ENSEOMG00000051035
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.1BG0019280, CQ.Regalona.r1.1BG0019310 ... CQ.Regalona.r1.2AG0021010, CQ.Regalona.r1.2AG0021020, CQ.Regalona.r1.3AG0000030, CQ.Regalona.r1.4AG0014710, CQ.Regalona.r1.6AG0009590, CQ.Regalona.r1.6AG0009600, CQ.Regalona.r1.6AG0009620, CQ.Regalona.r1.6BG0010490, CQ.Regalona.r1.8BG0000020, CQ.Regalona.r1.9AG0009850
Anacardiaceae	Pistacia vera	11	pistato.v30101370, pistato.v30109720, pistato.v30112150 ... pistato.v30112160, pistato.v30187060, pistato.v30192470, pistato.v30193410, pistato.v30268460, pistato.v30277330, pistato.v30290850, pistato.v30293090
Apiaceae	Apium graveolens	6	Ag1G00065, Ag1G00636, Ag6G02905, Ag7G01690, Ag7G01694 ... Ag9G01352
Arecaceae	Cocos nucifera	6	COCNU_04G005130, COCNU_16G005100, scaffold003614G000050 ... scaffold003614G000060, scaffold009298G000050, scaffold009298G000060
Arecaceae	Phoenix dactylifera	8	gene-LOC103702185, gene-LOC103702241, gene-LOC103709719 ... gene-LOC103716123, gene-LOC103717891, gene-LOC103717905, gene-LOC113460918, gene-LOC120112896
Asparagaceae	Asparagus officinalis	4	AsparagusV1_02.1451.V1.1, AsparagusV1_07.772.V1.1 ... AsparagusV1_07.773.V1.1, AsparagusV1_09.423.V1.1
Asteraceae	Flaveria trinervia	12	Ftri12G33647, Ftri14G05740, Ftri14G13934, Ftri15G01917 ... Ftri15G04261, Ftri15G08130, Ftri15G27865, Ftri18G25894, Ftri9G00225, Ftri9G14039, FtriNA05982, FtriNA23651
Brassicaceae	Arabidopsis thaliana	5	AT1G79620.1, AT5G49750.1, AT5G49760.1, AT5G49770.1 ... AT5G49780.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10012584m.g.v1.0, Thhalv10012589m.g.v1.0 ... Thhalv10018176m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g34690.v2.2, Sp6g11130.v2.2
Brassicaceae	Brassica nigra	5	BniB02g026480.2N, BniB04g021210.2N, BniB05g075180.2N ... BniB08g033460.2N, BniB08g033480.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq03G1721, Ceq04G2154, Ceq04G2155, Ceq07G2303, Ceq07G2304 ... Ceq07G2306
Casuarinaceae	Casuarina glauca	6	Cgl01G0426, Cgl03G1840, Cgl07G2463, Cgl07G2465, CglSG0054 ... CglSG0055
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g13180, gene.Cymno08g02630
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate04g21010, gene.Thate04g21050, gene.Thate06g05970
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-3742, nbisL1-mrna-5325, nbisL1-mrna-951
Nitrariaceae	Nitraria sibirica	10	evm.TU.LG01.101, evm.TU.LG01.107, evm.TU.LG01.1799 ... evm.TU.LG01.1804, evm.TU.LG01.1805, evm.TU.LG08.1016, evm.TU.LG08.1082, evm.TU.LG08.1083, evm.TU.LG08.1085, evm.TU.LG08.991
Plantaginaceae	Plantago ovata	5	Pov_00012824, Pov_00031379, Pov_00038943, Pov_00038945 ... Pov_00038946
Plumbaginaceae	Limonium bicolor	13	Lb1G01650, Lb1G02005, Lb1G02007, Lb2G11208, Lb3G15760 ... Lb3G15767, Lb3G15769, Lb3G15770, Lb3G15773, Lb3G15775, Lb6G30178, Lb6G30698, Lb7G35479
Poaceae	Echinochloa crus-galli	17	AH01.3763, AH02.3664, AH05.1991, AH05.3100, AH05.3104 ... AH05.457, BH01.4111, BH02.3288, BH02.3289, BH05.2132, BH05.3145, BH05.516, CH01.4373, CH02.3953, CH05.2193, CH05.3192, CH05.579
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0037630, gene-QOZ80_1BG0087710 ... gene-QOZ80_3AG0246930, gene-QOZ80_3BG0281260, gene-QOZ80_5AG0369000, gene-QOZ80_5AG0378100, gene-QOZ80_5AG0385260, gene-QOZ80_5BG0416590, gene-QOZ80_5BG0425220, gene-QOZ80_5BG0432360
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0070340.1, HORVU.MOREX.r3.2HG0192400.1 ... HORVU.MOREX.r3.3HG0234210.1, HORVU.MOREX.r3.3HG0296900.1, HORVU.MOREX.r3.4HG0379400.1
Poaceae	Lolium multiflorum	11	gene-QYE76_000694, gene-QYE76_002702, gene-QYE76_002774 ... gene-QYE76_010719, gene-QYE76_010720, gene-QYE76_010833, gene-QYE76_013932, gene-QYE76_046801, gene-QYE76_055742, gene-QYE76_055743, gene-QYE76_068169
Poaceae	Oryza coarctata	11	Oco01G023190, Oco05G012620, Oco06G013870, Oco09G005550 ... Oco09G012570, Oco10G006440, Oco10G012660, Oco10G012670, Oco22G004580, Oco23G003740, Oco24G003300
Poaceae	Oryza sativa	8	LOC_Os01g60060.1, LOC_Os03g21230.1, LOC_Os05g24010.1 ... LOC_Os05g40770.1, LOC_Os10g05560.1, LOC_Os10g05570.1, LOC_Os11g14050.1, LOC_Os12g10740.1
Poaceae	Paspalum vaginatum	9	gene-BS78_01G366000, gene-BS78_01G366200 ... gene-BS78_03G315600, gene-BS78_03G315700, gene-BS78_03G315800, gene-BS78_08G062900, gene-BS78_08G085600, gene-BS78_09G080000, gene-BS78_09G180500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0107836, Pt_Chr0501313, Pt_Chr0504463, Pt_Chr0504525 ... Pt_Chr0601778
Poaceae	Sporobolus alterniflorus	18	Chr01G018250, Chr01G022280, Chr01G022300, Chr01G033850 ... Chr02G006450, Chr03G018700, Chr05G026920, Chr06G025840, Chr06G025900, Chr06G025990, Chr12G005770, Chr12G014660, Chr12G014680, Chr17G010530, Chr18G012460, Chr19G013580, Chr22G005310, Chr27G002320
Poaceae	Thinopyrum elongatum	7	Tel1E01G492700, Tel2E01G731800, Tel3E01G166400 ... Tel3E01G543500, Tel3E01G543600, Tel4E01G313800, Tel6E01G145800
Poaceae	Triticum dicoccoides	11	gene_TRIDC1AG045270, gene_TRIDC1BG051170 ... gene_TRIDC2AG062120, gene_TRIDC2BG065990, gene_TRIDC3AG011410, gene_TRIDC3AG049030, gene_TRIDC3BG015450, gene_TRIDC3BG055200, gene_TRIDC3BG055210, gene_TRIDC4AG018240, gene_TRIDC4BG031420
Poaceae	Triticum aestivum	18	TraesCS1A02G304200.1, TraesCS1B02G314700.1 ... TraesCS1D02G303700.1, TraesCS2A02G431100.2, TraesCS2B02G452400.2, TraesCS2D02G428900.1, TraesCS3A02G095000.1, TraesCS3A02G340000.1, TraesCS3A02G340100.1, TraesCS3B02G110500.1, TraesCS3B02G371600.1, TraesCS3B02G371700.1, TraesCS3D02G095200.1, TraesCS3D02G333500.1, TraesCS3D02G333600.1, TraesCS4A02G131500.1, TraesCS4B02G173100.1, TraesCS4D02G175200.2
Poaceae	Zea mays	8	Zm00001eb015720_P003, Zm00001eb089730_P001 ... Zm00001eb138310_P001, Zm00001eb149780_P001, Zm00001eb149790_P004, Zm00001eb291070_P001, Zm00001eb350660_P004, Zm00001eb412300_P001
Poaceae	Zoysia japonica	8	nbis-gene-11606, nbis-gene-1706, nbis-gene-1707 ... nbis-gene-25346, nbis-gene-25419, nbis-gene-25421, nbis-gene-3394, nbis-gene-42141
Poaceae	Zoysia macrostachya	9	Zma_g11405, Zma_g1281, Zma_g24883, Zma_g25623, Zma_g28052 ... Zma_g28462, Zma_g3701, Zma_g8870, Zma_g8871
Portulacaceae	Portulaca oleracea	13	evm.TU.LG04.3152, evm.TU.LG04.3153, evm.TU.LG06.1778 ... evm.TU.LG08.615, evm.TU.LG10.1046, evm.TU.LG10.1047, evm.TU.LG11.1131, evm.TU.LG16.1327, evm.TU.LG16.535, evm.TU.LG16.536, evm.TU.LG17.1056, evm.TU.LG17.1057, evm.TU.LG20.1330
Posidoniaceae	Posidonia oceanica	6	gene.Posoc01g30010, gene.Posoc01g30030, gene.Posoc02g05670 ... gene.Posoc02g05700, gene.Posoc04g04970, gene.Posoc05g05000
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_1_RagTag.1045, evm.TU.Scaffold_1_RagTag.714 ... evm.TU.Scaffold_2_RagTag.1272, evm.TU.Scaffold_2_RagTag.1548
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-3917, nbisL1-mrna-3965, nbisL1-mrna-6558 ... nbisL1-mrna-7387, nbisL1-mrna-7389
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11519, nbisL1-mrna-19015, nbisL1-mrna-4959
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-18940, nbisL1-mrna-21159, nbisL1-mrna-5729
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000012l.456, evm.TU.utg000016l.885
Rhizophoraceae	Kandelia obovata	2	Maker00011240, Maker00017205
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11069, nbisL1-mrna-2817, nbisL1-mrna-8346 ... nbisL1-mrna-8348
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-21780, nbisL1-mrna-21861, nbisL1-mrna-830 ... nbisL1-mrna-833
Salicaceae	Populus euphratica	9	populus_peu07113, populus_peu07114, populus_peu08182 ... populus_peu08183, populus_peu08184, populus_peu08186, populus_peu11566, populus_peu25196, populus_peu33575
Solanaceae	Lycium barbarum	5	gene-LOC132598560, gene-LOC132598562, gene-LOC132598565 ... gene-LOC132598566, gene-LOC132606953
Solanaceae	Solanum chilense	3	SOLCI002194800, SOLCI002195000, SOLCI004774300
Solanaceae	Solanum pennellii	5	gene-LOC107004097, gene-LOC107004112, gene-LOC107006681 ... gene-LOC107007162, gene-LOC107032189
Tamaricaceae	Reaumuria soongarica	3	gene_2384, gene_2385, gene_7135
Tamaricaceae	Tamarix chinensis	3	TC01G0130, TC04G0986, TC04G0987
Zosteraceae	Zostera marina	1	Zosma02g17080.v3.1