Basic Information
Locus ID:
Ag6G02826
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 298826708 | 298835641 | + | Ag6G02826 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 69,764.34 Da | 40.23 | 86.97 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 8 | 66 | 6.7E-7 | IPR002130 |
| Pfam | PF19160 | SPARK | 224 | 389 | 4.1E-32 | IPR043891 |
| SUPERFAMILY | SSF50891 | Cyclophilin-like | 7 | 68 | 3.94E-11 | IPR029000 |
| Gene3D | G3DSA:2.40.100.10 | - | 1 | 74 | 2.0E-11 | IPR029000 |
| ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 1 | 67 | 10.15166 | IPR002130 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 485 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11050.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017236086.1 | PREDICTED: probable receptor-like protein kinase At1g11050 [Daucus carota subsp. sativus] | 0 |
| O04086 | Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana OX=3702 GN=At1g11050 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166DZ51 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006699 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.428856 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.092485 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.387362 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.871967 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.698616 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.376454 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.435827 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.391355 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.893765 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.051037 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.808131 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.451934 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.251494 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.428026 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.20294 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.334398 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.977584 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.183029 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.211115 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.260473 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.474203 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.393995 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.514128 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.075593 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.050203 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.79991 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.581792 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.221938 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.264197 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.245589 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.584188 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.968901 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.625188 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.285026 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.025284 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.515174 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.376757 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.380946 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.319031 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.134146 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.18471 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.279272 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.070207 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.244452 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.376268 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.959324 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23147, jg28393, jg30086 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_17530, gene_1916 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031463 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g098310, BVRB_6g143620 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12956, Sbi_jg4865, Sbi_jg52912, Sbi_jg7236 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12776, Seu_jg8946 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001485, GOSA_00010987 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl32162, Sgl37457, Sgl37460, Sgl51641, Sgl56940 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000003137, gene:ENSEOMG00000003293 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0014120, CQ.Regalona.r1.5AG0000750 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30039030, pistato.v30039070, pistato.v30051010 ... |
| Apiaceae | Apium graveolens | 8 | Ag10G00485, Ag10G00535, Ag10G00536, Ag6G01860, Ag6G01861 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G020370, COCNU_01G020390, COCNU_01G020400 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702601, gene-LOC103702728, gene-LOC113462444 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2930.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G12685, Ftri16G10698, Ftri16G31916 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G11050.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007041m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g09740.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g006020.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1864, Ceq09G0172 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0205 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5252 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG06.843, evm.TU.LG06.844, evm.TU.LG08.747 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002005, Pov_00039962 |
| Poaceae | Echinochloa crus-galli | 1 | AH06.2396 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0042210, gene-QOZ80_5AG0372630 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0065070.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013167, gene-QYE76_056933, gene-QYE76_056967 |
| Poaceae | Oryza coarctata | 4 | Oco01G026650, Oco02G027660, Oco09G010040, Oco10G010130 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g66020.1, LOC_Os05g34950.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G359000, gene-BS78_09G149500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505047, Pt_Chr0600078 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr05G030250, Chr0G023520, Chr0G032280, Chr18G009710 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G435500, Tel3E01G646300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG039480, gene_TRIDC1BG044930 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G264400.1.cds1, TraesCS1B02G275100.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb349080_P001, Zm00001eb366140_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23918 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g28268, Zma_g9137 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3500, evm.TU.LG08.1793, evm.TU.LG16.82 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11250 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.1425, evm.TU.Scaffold_7_RagTag.1136 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18710, nbisL1-mrna-3707, nbisL1-mrna-9308 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-455, nbisL1-mrna-5560 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13123, nbisL1-mrna-18869 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.163, add.evm.TU.utg000009l.151 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-19996, nbisL1-mrna-22439, nbisL1-mrna-22441 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-19196, nbisL1-mrna-19198, nbisL1-mrna-9805 |
| Salicaceae | Populus euphratica | 3 | populus_peu09683, populus_peu14773, populus_peu24837 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598690, gene-LOC132627151 |
| Solanaceae | Solanum chilense | 1 | SOLCI002907800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107030431 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.17067_chr08_+, gene_15117 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1094 |
| Zosteraceae | Zostera marina | 1 | Zosma02g06860.v3.1 |