halophFGD

Basic Information

Locus ID: Ag6G02803

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Proteinaceous RNase P 1, chloroplastic

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	292674275	292680913	-	Ag6G02803

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.12	66,212.64 Da	41.90	79.85	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18671	PIN_PRORP-Zc3h12a-like	393	516	1.56014E-60	-
Pfam	PF17177	Pentacotripeptide-repeat region of PRORP	89	294	6.1E-68	IPR033443
Pfam	PF16953	Protein-only RNase P	335	561	3.0E-72	IPR031595
Gene3D	G3DSA:3.40.50.11980	-	353	527	9.1E-228	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	96	564	9.1E-228	IPR011990
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	172	206	8.812943	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K18213 (proteinaceous RNase P [EC:3.1.26.5])

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G32230.1	proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs.
RefSeq	XP_017240728.1	PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial [Daucus carota subsp. sativus]
Swiss-Prot	Q66GI4	Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1
TrEMBL	A0A4S4DA25	ribonuclease P OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_019105 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	14.904838	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	11.007476	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	8.696431	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	9.140065	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	7.378305	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	7.841355	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	6.045712	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	5.31853	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	18.856569	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	17.007757	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	21.520679	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	20.816282	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	20.527637	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	21.123747	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.62382	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	9.161896	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.067252	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.744275	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	13.175805	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	12.061753	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	11.622164	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.347287	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	13.727364	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	14.131166	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	12.485336	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	15.113703	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.415008	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	14.04762	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	13.191734	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.179807		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.097624		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.734006		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	13.508636		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	9.815114		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	13.087946		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	9.283236		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.313828		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.630288		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	25.046854	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	13.084087	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	16.744387	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	10.509902	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.582219	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	7.919089	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	7.432283	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	11.112874	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.018615	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	18.945444	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	20.33742	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	17.188494	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg15506, jg2678, jg6727, jg8162
Aizoaceae	Mesembryanthemum crystallinum	3	gene_12959, gene_6797, gene_9092
Amaranthaceae	Atriplex hortensis	1	Ah028940
Amaranthaceae	Beta vulgaris	4	BVRB_2g036660, BVRB_6g131580, BVRB_7g176330, BVRB_8g196710
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg20800, Sbi_jg22969, Sbi_jg24993, Sbi_jg26968 ... Sbi_jg33581, Sbi_jg8847
Amaranthaceae	Salicornia europaea	4	Seu_jg16835, Seu_jg19755, Seu_jg19756, Seu_jg8290
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002952, GOSA_00007788, GOSA_00009315
Amaranthaceae	Suaeda glauca	9	Sgl24756, Sgl29904, Sgl42231, Sgl47008, Sgl62014, Sgl66574 ... Sgl73289, Sgl75145, Sgl76809
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000008297, gene:ENSEOMG00000009035 ... gene:ENSEOMG00000019237, gene:ENSEOMG00000020817, gene:ENSEOMG00000031468, gene:ENSEOMG00000039046, gene:ENSEOMG00000039245, gene:ENSEOMG00000045114
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2BG0012770, CQ.Regalona.r1.7AG0000680 ... CQ.Regalona.r1.7AG0012700, CQ.Regalona.r1.8AG0020020, CQ.Regalona.r1.8BG0022420, CQ.Regalona.r1.9BG0005080
Anacardiaceae	Pistacia vera	3	pistato.v30056760, pistato.v30165180, pistato.v30256680
Apiaceae	Apium graveolens	3	Ag2G01699, Ag2G02454, Ag6G02803
Arecaceae	Cocos nucifera	3	COCNU_01G020190, COCNU_02G009740, COCNU_09G000030
Arecaceae	Phoenix dactylifera	4	gene-LOC103696071, gene-LOC103702617, gene-LOC103703076 ... gene-LOC120112218
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1544.V1.1, AsparagusV1_02.835.V1.1 ... AsparagusV1_10.561.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G29821, Ftri2G13306, Ftri8G28346
Brassicaceae	Arabidopsis thaliana	4	AT2G16650.1, AT2G32230.1, AT4G21900.1, AT5G60430.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10016443m.g.v1.0, Thhalv10022627m.g.v1.0 ... Thhalv10024761m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g30103.v2.2, Sp4g14590.v2.2, Sp7g20050.v2.2
Brassicaceae	Brassica nigra	3	BniB03g064020.2N, BniB05g015180.2N, BniB06g021700.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G2251, Ceq05G1779, Ceq06G1507
Casuarinaceae	Casuarina glauca	3	Cgl04G2452, Cgl05G1768, Cgl06G1562
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno07g01930, gene.Cymno14g00030, gene.Cymno16g02490
Dunaliellaceae	Dunaliella salina	1	Dusal.0024s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g16820, gene.Thate03g09540, gene.Thate05g13080 ... gene.Thate08g05150, gene.Thate09g15890
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2014, evm.TU.LG07.1097, evm.TU.LG10.371
Plantaginaceae	Plantago ovata	3	Pov_00003855, Pov_00015830, Pov_00040020
Plumbaginaceae	Limonium bicolor	5	Lb2G10943, Lb2G11508, Lb3G16161, Lb5G29367, Lb5G29502
Poaceae	Echinochloa crus-galli	9	AH02.4633, AH06.2502, AH07.1196, BH02.4696, BH06.2302 ... BH07.1274, CH06.2525, CH07.1224, Contig926_1.9
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0047980, gene-QOZ80_1BG0097820 ... gene-QOZ80_2AG0109090, gene-QOZ80_2BG0162580, gene-QOZ80_4AG0298190, gene-QOZ80_4BG0328850
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0217620.1, HORVU.MOREX.r3.3HG0326700.1
Poaceae	Lolium multiflorum	7	gene-QYE76_017031, gene-QYE76_020592, gene-QYE76_020735 ... gene-QYE76_021937, gene-QYE76_035957, gene-QYE76_058543, gene-QYE76_059239
Poaceae	Oryza coarctata	5	Oco01G030860, Oco02G031980, Oco03G007520, Oco07G020170 ... Oco08G019520
Poaceae	Oryza sativa	3	LOC_Os01g73690.1, LOC_Os02g17360.1, LOC_Os04g59600.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G416400, gene-BS78_04G117600 ... gene-BS78_06G297200
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0102500, Pt_Chr0102529, Pt_Chr0103030, Pt_Chr0201951 ... Pt_Chr0601012
Poaceae	Sporobolus alterniflorus	8	Chr02G000320, Chr02G020050, Chr05G034470, Chr06G031090 ... Chr15G022520, Chr25G000090, Chr26G019080, Chr30G000290
Poaceae	Thinopyrum elongatum	3	Tel2E01G1039700, Tel3E01G869700, Tel7E01G839600
Poaceae	Triticum dicoccoides	3	gene_TRIDC2AG081700, gene_TRIDC2BG090760 ... gene_TRIDC3AG073450
Poaceae	Triticum aestivum	6	TraesCS2A02G560400.1, TraesCS2D02G520400.1.cds1 ... TraesCS2D02G569800.1, TraesCS3A02G518500.1, TraesCS3B02G585700.1, TraesCS3D02G525800.1
Poaceae	Zea mays	4	Zm00001eb056850_P001, Zm00001eb140030_P001 ... Zm00001eb237440_P004, Zm00001eb410940_P001
Poaceae	Zoysia japonica	3	nbis-gene-23287, nbis-gene-28073, nbis-gene-34125
Poaceae	Zoysia macrostachya	3	Zma_g12004, Zma_g15353, Zma_g20755
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.2848, evm.TU.LG06.1676, evm.TU.LG07.2 ... evm.TU.LG07.88, evm.TU.LG11.1029, evm.TU.LG23.1049
Posidoniaceae	Posidonia oceanica	3	gene.Posoc05g18910, gene.Posoc06g04520, gene.Posoc09g07560
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_13_RagTag.474, evm.TU.Scaffold_3_RagTag.816 ... evm.TU.Scaffold_4_RagTag.1935
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-25638, nbisL1-mrna-30622, nbisL1-mrna-30628 ... nbisL1-mrna-3643
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-14985, nbisL1-mrna-6642, nbisL1-mrna-8023
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15878, nbisL1-mrna-4703, nbisL1-mrna-6493
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.1105, evm.TU.utg000015l.257 ... evm.TU.utg000019l.712
Rhizophoraceae	Kandelia obovata	2	Maker00001053, Maker00015378
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14779, nbisL1-mrna-4170, nbisL1-mrna-5177
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-1217, nbisL1-mrna-13248, nbisL1-mrna-22140
Salicaceae	Populus euphratica	6	populus_peu08594, populus_peu09794, populus_peu21837 ... populus_peu22145, populus_peu24693, populus_peu36743
Solanaceae	Lycium barbarum	2	gene-LOC132604288, gene-LOC132644014
Solanaceae	Solanum chilense	3	SOLCI001911000, SOLCI004312600, SOLCI006787800
Solanaceae	Solanum pennellii	3	gene-LOC107023400, gene-LOC107023757, gene-LOC107026091
Tamaricaceae	Reaumuria soongarica	4	STRG.3780_chr02_-, gene_2479, gene_3564, gene_8013
Tamaricaceae	Tamarix chinensis	4	TC03G1807, TC04G1178, TC10G1422, TC11G0943
Zosteraceae	Zostera marina	3	Zosma02g18610.v3.1, Zosma04g24060.v3.1, Zosma05g04030.v3.1