Basic Information
Locus ID:
Ag6G02800
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 292610968 | 292639324 | + | Ag6G02800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 80,274.65 Da | 50.04 | 88.08 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08771 | DLP_1 | 41 | 337 | 7.71195E-65 | IPR001401 |
| Pfam | PF00350 | Dynamin family | 46 | 226 | 2.2E-28 | IPR045063 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 18 | 345 | 1.89E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 21 | 389 | 5.5E-56 | IPR027417 |
| SMART | SM00053 | dynamin_3 | 17 | 243 | 1.7E-5 | IPR001401 |
| ProSiteProfiles | PS51718 | Dynamin-type guanine nucleotide-binding (G) domain profile. | 40 | 337 | 60.896824 | IPR030381 |
| PRINTS | PR00195 | Dynamin signature | 68 | 85 | 1.9E-12 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 144 | 161 | 1.9E-12 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 43 | 61 | 1.9E-12 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 215 | 231 | 1.9E-12 | IPR022812 |
| Coils | Coil | Coil | 340 | 360 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19720.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFPARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts. | 0 |
| RefSeq | XP_017230423.1 | PREDICTED: dynamin-like protein ARC5 [Daucus carota subsp. sativus] | 0 |
| Q84N64 | Dynamin-like protein ARC5 OS=Arabidopsis thaliana OX=3702 GN=ARC5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A162AHB4 | Dynamin-type G domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001802 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.920665 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.214152 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.281794 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.043839 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.119754 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.193565 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.511823 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.587345 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 59.296165 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 60.516449 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 62.986191 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 43.342999 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 47.585442 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 52.237778 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 27.973593 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 25.027821 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 32.818443 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 31.778032 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 48.470848 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 25.895393 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 30.690828 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.252708 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.788679 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.599092 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 28.04434 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 57.454922 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 42.759468 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 43.574017 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 41.341755 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.611718 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.277172 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.346766 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.518688 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.121713 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.234424 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.656447 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.296713 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.665002 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 53.128811 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 40.514233 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 28.920216 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.01058 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.604579 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.124881 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.410166 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.553668 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.446318 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.675461 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.751152 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.131147 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28453 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9459 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033585 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190220 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25278, Sbi_jg9132 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19462 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011215 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl43036, Sgl43037, Sgl43045, Sgl47857 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010628, gene:ENSEOMG00000011620 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0013190, CQ.Regalona.r1.8BG0014500 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30278880 |
| Apiaceae | Apium graveolens | 1 | Ag6G02800 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G003070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701354 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.657.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G09233 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G19720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020106m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g17760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g051030.2N, BniB07g051060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0697 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0751 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00950 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g11520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1158 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039866 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31980 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.346, BH05.401, CH05.458 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383680, gene-QOZ80_5BG0430500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0455830.1 |
| Poaceae | Oryza coarctata | 1 | Oco24G002580 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g07880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G049900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703341 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G012900, Chr27G003000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G219600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG018760, gene_TRIDC5BG020980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G114600.1, TraesCS5B02G120600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb408290_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25513, nbis-gene-25514 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24832 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1552, evm.TU.LG22.445 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g02200 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1579 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3664, nbisL1-mrna-3672 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15247 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18967 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.365 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2795 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21832 |
| Salicaceae | Populus euphratica | 3 | populus_peu04756, populus_peu12903, populus_peu12913 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606401 |
| Solanaceae | Solanum chilense | 1 | SOLCI002599800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002452 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9093 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0738 |