Basic Information
Locus ID:
Ag6G02716
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
XRI1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 278404681 | 278409216 | + | Ag6G02716 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 33,075.38 Da | 44.16 | 57.07 | -0.85 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48720.2 | x-ray induced transcript 1. Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation. | 0 |
| RefSeq | XP_017235688.1 | PREDICTED: protein XRI1-like [Daucus carota subsp. sativus] | 0 |
| Q6NLW5 | Protein XRI1 OS=Arabidopsis thaliana OX=3702 GN=XRI1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A166GM84 | Protein XRI1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001774 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.393108 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.298093 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.311152 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.267542 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.456776 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.830103 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.495321 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.531392 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.451717 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.135948 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.276016 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.845222 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.024477 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.45993 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.278673 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.496881 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 20.672899 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.611732 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.866457 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.660686 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.208633 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.377989 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.921822 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.151926 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.980309 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.311579 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.208405 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.194638 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.893093 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.322549 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.36754 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.984404 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.834238 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.548476 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.327433 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.099361 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.81632 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.117449 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.778946 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.239756 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.088342 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.018455 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.357012 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.616355 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.842712 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.158237 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.344522 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.18405 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.791681 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.305838 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg11154, jg12591, jg27870, jg5753 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5388 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah001419, Ah007708, Ah007713, Ah028289 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167750 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg26562, Sbi_jg30883, Sbi_jg34003, Sbi_jg58395 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15086, Seu_jg28272 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011906 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73846, Sgl77348 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000005682, gene:ENSEOMG00000007755 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010160, CQ.Regalona.r1.7BG0012290 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30021250, pistato.v30117930, pistato.v30119770 |
| Apiaceae | Apium graveolens | 2 | Ag6G02716, Ag7G00068 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G008490, COCNU_11G002690 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103697997, gene-LOC103699123, gene-LOC103709378 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.547.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G30934, Ftri9G17820 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48720.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004684m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g19130.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g069780.2N, BniB04g005790.2N, BniB08g002240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1985 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2093 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g11880 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g21580 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6388, nbisL1-mrna-9758 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1395 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026019 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23981, Lb5G28659 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4315, BH02.4346, CH02.4391 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0044440, gene-QOZ80_1BG0094460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0309790.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057384 |
| Poaceae | Oryza coarctata | 2 | Oco01G028410, Oco02G029490 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g68930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G381300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600502 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G002600, Chr03G022720, Chr05G031830, Chr08G019300 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G672800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG060120, gene_TRIDC3BG067910 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G423900.1, TraesCS3B02G459800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb143390_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11004, nbis-gene-28359 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11806, Zma_g9261 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1041, evm.TU.LG12.690, evm.TU.LG19.1417 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28910 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1215, evm.TU.Scaffold_9_RagTag.1119 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11687 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-8597, nbisL1-mrna-9083 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11235, nbisL1-mrna-18630 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.693, evm.TU.utg000006l.708 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009904, Maker00012952 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1367, nbisL1-mrna-9833 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19914 |
| Salicaceae | Populus euphratica | 2 | populus_peu30901, populus_peu37718 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607176, gene-LOC132610592 |
| Solanaceae | Solanum chilense | 2 | SOLCI000178700, SOLCI000393300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021388, gene-LOC107029463 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.340_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0651 |
| Zosteraceae | Zostera marina | 3 | Zosma01g39420.v3.1, Zosma03g30250.v3.1, Zosma04g01520.v3.1 |