Basic Information
Locus ID:
Ag6G02670
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DNA-directed DNA polymerase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 273974319 | 273975741 | - | Ag6G02670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 26,066.85 Da | 30.73 | 85.69 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 58 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017218363.1 | PREDICTED: uncharacterized protein LOC108195868 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A162B260 | N-acetyltransferase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001699 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.23825 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.364814 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.284598 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.4815 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.069711 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.850623 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.687344 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.256845 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.373884 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.102553 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.19367 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.37944 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.853926 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.571677 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.993133 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.981452 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.544362 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.126829 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.56367 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.90285 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.212626 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.371045 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.175513 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.728649 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.314744 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.685369 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.162137 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.25594 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.979748 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.434179 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.06438 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.593263 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 24.658951 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.404222 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 37.730366 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.117945 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.600943 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 17.72154 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.570296 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.200015 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.982942 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.488395 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.827446 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.860783 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.571128 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.097691 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.18046 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.109482 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.561402 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.77944 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26296 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21452, gene_21455 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009227 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g222980 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31333, Sbi_jg57951 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25580 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004469 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54523, Sgl59862 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019481, gene:ENSEOMG00000038331 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0000220, CQ.Regalona.r1.9AG0024200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205290 |
| Apiaceae | Apium graveolens | 1 | Ag6G02670 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G007010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103718567, gene-LOC120107550 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1234.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G18971 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011799m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | SpUn0137_0020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g060470.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq09G0253, Ceq09G0255, Ceq09G0259 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g13740 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0882s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32340 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.1635, evm.TU.LG08.608, evm.TU.LG11.411 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007774 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G18614, Lb6G31099 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.1639, CH01.1717 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0177230 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0442710.1, HORVU.MOREX.r3.5HG0445710.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G002640, Oco20G002810 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g21020.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K046800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201387, Pt_Chr0201418 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G005550, Chr07G006030, Chr13G017640 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G168500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG013000, gene_TRIDC5BG014970 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G084900.1, TraesCS5B02G090900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb019030_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27692 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13103 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1853, evm.TU.LG15.1309 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g25730, gene.Posoc03g25830 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.410 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5819 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9746 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.712 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004955 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2553 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16502 |
| Salicaceae | Populus euphratica | 2 | populus_peu01622, populus_peu36213 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598939 |
| Solanaceae | Solanum chilense | 1 | SOLCI001927500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014508 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_720 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1983 |
| Zosteraceae | Zostera marina | 1 | Zosma05g28570.v3.1 |