Basic Information
Locus ID:
Ag6G02645
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
occurring C-terminal to leucine-rich repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 271583001 | 271591598 | - | Ag6G02645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 92,208.40 Da | 51.15 | 79.68 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52058 | L domain-like | 112 | 210 | 1.53E-6 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 479 | 746 | 1.98E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 474 | 763 | 4.8E-40 | IPR015943 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 101 | 226 | 1.7E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 328 | 399 | 3.1E-5 | IPR032675 |
| SMART | SM00446 | LRRcap_2 | 359 | 377 | 5.2E-4 | IPR003603 |
| SMART | SM00320 | WD40_4 | 567 | 602 | 65.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 605 | 646 | 7.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 509 | 551 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 654 | 689 | 100.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 613 | 648 | 8.597424 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 613 | 648 | 10.207686 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34280.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017230604.1 | PREDICTED: uncharacterized protein LOC108205239 [Daucus carota subsp. sativus] | 0 |
| Q8GYY7 | Protein DWD HYPERSENSITIVE TO UV-B 1 OS=Arabidopsis thaliana OX=3702 GN=DHU1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166GIL7 | LRRcap domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001664 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.41045 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 23.033524 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 27.709299 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 29.259243 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 28.916515 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 37.034363 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 30.310806 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.688156 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 44.694145 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 46.649864 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.279358 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.728207 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 37.048058 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 32.744759 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 22.197098 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.369791 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.780048 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 32.821247 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 28.963011 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 32.415451 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 45.896881 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.260096 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.811674 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.812536 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.777561 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 42.870972 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 29.813116 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 41.946491 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 38.305748 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 24.009764 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 41.774143 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 26.048853 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 63.216221 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 27.507599 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 52.278858 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 39.463993 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 21.62385 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 24.380836 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 53.82349 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 63.049191 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 48.837257 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 26.624964 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 36.481125 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 79.818413 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 66.550659 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 26.342779 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 55.432198 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.295275 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.35714 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.868908 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17383, jg28623, jg39976 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11144, gene_16717 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015913, Ah027590 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g127660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13106, Sbi_jg25297, Sbi_jg52743, Sbi_jg9148 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19446, Seu_jg9101 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010151, GOSA_00011200 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl33855, Sgl39228, Sgl42996, Sgl47817, Sgl47818 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000002533, gene:ENSEOMG00000011679 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0025720, CQ.Regalona.r1.6BG0027260 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205430 |
| Apiaceae | Apium graveolens | 2 | Ag4G01134, Ag6G02645 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G002780 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705263 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1241.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G31372 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024491m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g004000.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1386, Ceq09G0305 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1387, Cgl09G0341 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g05940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g15080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10552 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.565 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012205, Pov_00029138 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.1062, evm.TU.LG05.110, evm.TU.LG05.1608 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g17820 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.386 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4809 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1260 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9766 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.729 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004817 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2535 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6017 |
| Salicaceae | Populus euphratica | 2 | populus_peu23326, populus_peu36253 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598967, gene-LOC132621150 |
| Solanaceae | Solanum chilense | 3 | SOLCI002693900, SOLCI003634800, SOLCI006420300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008517, gene-LOC107011495 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9081 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2064 |